CI01000034_01666303_01667765 (HOXB5A, HOXB5AA, HOXB5)


Basic Information

Item Value
gene id CI01000034_01666303_01667765
gene name HOXB5A, HOXB5AA, HOXB5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1666064 ~ 1667900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_01666303_01667765.mRNA
ACCCCCATATTTGGCCGCATACATAGCAAAAACGAAGTACAGTGCATTGCTATAATTCATTAATACATCATAAATCGTGAAGCACAGCGTTATAACGACCAAGATCTACAAATCAAGCCCTCTAAAACAACCTAAATGAGCTCTTACTTTGTAAACTCGTTCTCAGGGCGCTACCCAAATGGCCCTGACTATCAGTTACTAAATTATGGAACTAGCAGCAGCGCTATGAACGCCTCGTACAGGGACTCCGGCACCATGCATTCAGGCTCTTACGGCTACAACTACAATGGAATGGACCTAAGCGTCAATCGTTCAACCAGCACTGGCCACTTTGGGGCGGTTGGGGACAACTCCCGGGTCTTCCAGTCTCCAGCCCCGGAGACGCGATTCCGGCAGCCGTCAAGCTGCTCGCTCGCGTCTCCGGAGCCGCTGCCTTGTTCCAACAGCGAAAGCCTTGGACCCAAAGGCTCTTCGCCCCCTTCCGACCAAAGCACCACCACTGCGGGTAATAATCTCACCAACAACACACATTTCACAGAAATCGACGAAGCCAGCGTTTCTTCTGAGACCGAGGAGGCGTCTCACAGAGCGAACAACTCTGCACCTCGGACACAACAGAAGCAAGAGAGCACGGCAACCTCCACTACCTCGGCGACGTCCGATGGCCAAGCTCCCCAAATATTCCCTTGGATGAGGAAACTACATATTAGCCATGATATGACTGGACCAGACGGCAAAAGGGCCCGAACTGCATATACCCGCTATCAGACGCTAGAGCTGGAAAAAGAGTTCCATTTCAATAGATACCTCACCCGAAGGAGGAGGATAGAGATAGCCCACGCTCTGTGCCTCTCAGAGCGTCAAATTAAGATATGGTTCCAAAACCGGCGGATGAAATGGAAAAAGGACAATAAACTGAAGAGCATGAGTCTGGCTACCGCAGGTAGCGCTTTCCAGCCATAGTTGTACCCCAAGTCCTACTACGTGGTGTGCAAAAGAAAATGACGAGGAAAACGAGATGAAAAATAGGTCTCAAAACATTACTTACAAAGTACTGTACATCGCGGCACCTTTTGGCATGTTATGGATGTTTTAGGCATTTTAAAATTCTACTGTGGTACTGCTATAATGAAGCGAAAATTAGTGTTCCTATGTTGTTCTTTTTAATACTATGGTGACTATAATTTTGGCAAGTAAATAAA

Function

symbol description
hoxb5a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within brain development and cell fate specification. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; mesenchyme; mesoderm; neural tube; and somite. Orthologous to human HOXB5 (homeobox B5).
hoxb5 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in anterior/posterior pattern specification and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within embryonic skeletal system morphogenesis; endothelial cell differentiation; and regulation of transcription, DNA-templated. Located in cytosol; fibrillar center; and nucleoplasm.

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09305 HOX_5; homeobox protein HoxA/B/C5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_01666303_01667765.mRNA True 1202 mRNA 0.48 2 1666064 1667900

Neighbor

gene id symbol gene type direction distance location
CI01000034_01652735_01654473 HOXB4, HOXB4A, HOXB4AB, HOXB4AA coding downstream 10458 1652277 ~ 1655606 (-)
CI01000034_01648924_01649935 NA coding downstream 15661 1648898 ~ 1650403 (-)
CI01000034_01625293_01629938 HOXB3AA, HOXB3A, HOXB3 coding downstream 34692 1624700 ~ 1631372 (-)
CI01000034_01621979_01623991 HOXB2, HOXB2A coding downstream 41995 1621789 ~ 1624069 (-)
CI01000034_01603228_01604932 HOXB1A coding downstream 60634 1602434 ~ 1605430 (-)
CI01000034_01670204_01671915 HOXB6AA, HOXB6A, HOXB6AB, HOXB6 coding upstream 2003 1669903 ~ 1671935 (-)
CI01000034_01675050_01677339 NA coding upstream 6893 1674793 ~ 1678699 (-)
CI01000034_01680053_01683539 HOXB7A coding upstream 11689 1679589 ~ 1683539 (-)
CI01000034_01684215_01687260 HOXB8AB, HOXB8, HOXB8A, HOXB8AA coding upstream 16277 1684177 ~ 1687260 (-)
CI01000034_01694301_01697568 HOXB9, HOXB9AB, HOXB9A coding upstream 26141 1694041 ~ 1698427 (-)
G171631 NA non-coding downstream 264152 1400324 ~ 1401912 (-)
G171582 NA non-coding downstream 417711 1248143 ~ 1248353 (-)
G171572 NA non-coding downstream 467794 1197978 ~ 1198270 (-)
G171405 NA non-coding downstream 538421 1126485 ~ 1127643 (-)
G171549 NA non-coding downstream 543345 1122417 ~ 1122719 (-)
G171704 NA non-coding upstream 42778 1710678 ~ 1710957 (-)
G171712 NA non-coding upstream 72744 1740644 ~ 1741140 (-)
G171724 NA non-coding upstream 96601 1764501 ~ 1768078 (-)
G171731 NA non-coding upstream 112946 1780846 ~ 1781056 (-)
G171751 NA non-coding upstream 159696 1827596 ~ 1830627 (-)
CI01000034_01312431_01312780 PRR15LA other downstream 347810 1311529 ~ 1312780 (-)
CI01000034_01062505_01083413 NA other downstream 588842 1062444 ~ 1083413 (-)
CI01000034_00571856_00577732 NA other downstream 1081781 571856 ~ 577775 (-)
G171229 NA other downstream 1398818 229404 ~ 267246 (-)
G171755 NA other upstream 196218 1864118 ~ 1866373 (-)
G171835 NA other upstream 773921 2441821 ~ 2446293 (-)
CI01000034_02510595_02511512 NA other upstream 841913 2510061 ~ 2511521 (-)
G172016 NA other upstream 1567063 3234963 ~ 3236615 (-)
G172151 NA other upstream 1723613 3391144 ~ 3451802 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025309 hoxb5a coding NC_007114.7 CM002887.2 23707691 ~ 23710095 (+)