G169698


Basic Information

Item Value
gene id G169698
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 2091899 ~ 2094617 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU192794
GATGATGGAATGAGAGATGGAACAAGAATGGGATTACAGATTATTTCCAAATTTGCCAGTTTTATTTACAAAGAGTTTGCTTCAAGAGGGCTGCCATCCTTAATAATAAGTACAAGAAGAGATACACACATCCAAAACCAATCCTTTTTGACACTGTACGGTCAAGTATTTGTTCAAATCTTGCAGTCTCTATGGCGTCTAGTAGAGATGCTAAAGCTTAGCACAATGTGCTTACTCCTCATTTAAGTTCAGATAACTGACTGCTAAACAGCTCTCATTAGCACAAATGAACACATCCTCGTATACTTTTGCCAAAAGAAATCACATGGGCTACGTTATTATGCATCCACCCTTATCCTTGAAGGGGTTTTTGTCCTCAGGAACTCCTTTTATGAGAGGATCTTCTGCGGCTTGGGCCTCAACCCATTCACAAATCTCCTTTGCGGTTTTAGAAACTGGCTCTCTAGTGTTCTTAACCTCCTTCTGAAGTTGTTCCAGCTCCATTTTCAGGATCTCCTTATCAGACATATCCCGCGCCATCTTGCCCTATCGGTCAGTGGGGCAGCCGATGGAGGGAACAGGTCACTCTCTGCACTTTAAGGGACCATGTACAGGGTTTGTGGTCTGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192794 True 630 lncRNA 0.43 3 2091899 2094617

Neighbor

gene id symbol gene type direction distance location
CI01000034_01900645_01947187 RAPGEFL1 coding upstream 144712 1900645 ~ 1947187 (+)
CI01000034_01872601_01880795 CASC3 coding upstream 211104 1872601 ~ 1880795 (+)
CI01000034_01862099_01867869 NA coding upstream 224030 1862099 ~ 1867869 (+)
CI01000034_01858418_01860499 NA coding upstream 230814 1858418 ~ 1861085 (+)
CI01000034_01811735_01836960 IGF2BP1 coding upstream 254939 1811467 ~ 1836960 (+)
CI01000034_02231423_02231755 NA coding downstream 136686 2231303 ~ 2232124 (+)
CI01000034_02256162_02260170 NA coding downstream 161148 2255765 ~ 2260464 (+)
CI01000034_02275470_02281951 CYB561 coding downstream 179984 2274601 ~ 2282604 (+)
CI01000034_02421189_02423360 NA coding downstream 326409 2421026 ~ 2423527 (+)
CI01000034_02550332_02552258 NA coding downstream 455715 2550332 ~ 2552839 (+)
G169696 NA non-coding upstream 1251 2090405 ~ 2090648 (+)
G169677 NA non-coding upstream 16990 2074696 ~ 2074909 (+)
G169656 NA non-coding upstream 86459 2005068 ~ 2005440 (+)
G169653 NA non-coding upstream 88646 2002821 ~ 2003253 (+)
G169636 NA non-coding upstream 106982 1983797 ~ 1984917 (+)
G169706 NA non-coding downstream 14905 2109522 ~ 2113332 (+)
G169692 NA non-coding downstream 71867 2166484 ~ 2166926 (+)
G169686 NA non-coding downstream 75562 2170179 ~ 2182145 (+)
G169760 NA non-coding downstream 140391 2235008 ~ 2304098 (+)
G169768 NA non-coding downstream 149217 2243834 ~ 2259804 (+)
CI01000034_01729413_01730790 EVE1 other upstream 360722 1729413 ~ 1731179 (+)
G169340 NA other upstream 781021 1250219 ~ 1310878 (+)
G169394 NA other upstream 898339 1150297 ~ 1193560 (+)
G169357 NA other upstream 972880 1053543 ~ 1119019 (+)
G169309 NA other upstream 1121978 969261 ~ 969921 (+)
G169806 NA other downstream 223356 2317973 ~ 2337690 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other downstream 1339519 3432846 ~ 3438839 (+)
CI01000034_04125435_04125780 RPRML other downstream 2030483 4125100 ~ 4126825 (+)
CI01000034_04192675_04200041 NA other downstream 2100021 4192311 ~ 4200636 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location