G172312


Basic Information

Item Value
gene id G172312
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 3928905 ~ 3931285 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195763
ATCCACTCAACTGGACAATACCACCATGGATCTCCTGTCACAGTCATGTACTTCATTTGTGTTCAATTCTAACAGATTATTACCCATTAATCAAAAATATCCACTCTCTACTACAAAGGAGCGGCTAGTTTTTTAGCACGAGGCCTACAGTAGTTGGGCAAACATACCTGTGTCAAAGATGACTACTAGCACTAAAACATTCTTGCTAAAATGGTATTAGAAAAAAAAAAATAATTAGAGAATAAGTGCTCTATAAAATTACAGAAATCACACATAAGTTTTTCCTCAATCGCTTTGGCACATTTCTCGAAGCCTTAACATTCTCTAAACTGTAAGTGCAACCGTCACAACTGTTTGCTGAAACATCAGAACTCTATTGCATCTCTATTTGTGTCAGTAAACTGGCCAATGCCACCAAAATAACAAATTTATTTTTGTAGAAATGTGTTACATGTAAACTGGAAATTCACAGATCCTAGCTCTTTTTTACGTATTCTATACAGTATGTCTTCCTCTAACACCACACATTCTTATATATCTTCCCATTGCTCTTCCATGACAAGCAACTGTGTTTTGTCAGTTTATATGTAACACATTTCTACAAAAATAAACTGTTGCTGCTGTTTAGGGAGTAAGACGTTCCTCCATGTTCAAAAATGGCAGTGACTTGCTGGGCACACTCCATATAGGCTACTATATGCTTGATTGTTTGATTGGTAAGATTGTGATTCCTATTTCATTCCAATGGCAGGCCATTTGCCAATTTAGCAGACATTATAAACATTCCATTTCACAGGTATTTATGGAATATACATGCTTGTCTGACATATTATGATAACTGTCAATCTTTGATCAACAAGCCATGTGCATTTAGTCATTGTGGAAATTGTAGACAATTGTATTTACTCTTTTGCACATACACTATATTGCCAAAAGGTTTGGGACGCCTGCCTTTACGTGCACATGAACTTTAATGACATCCCATTCTTAATCCGTAGGGTTTAATATGGAGTAGGCCCACCCTTTGCAGCTATAACAGCTTTAACTCTTCTGGGAAGGCTTTCCACAAGGTTTAGGAGTGTGTTTATGGGAATTTTTGACCATTCTTCTAGAAGCGCATTTGTGAGGTCAGGCAGTGATGTTGGCGAGAAGGCCTGGCTCGCAGTCTCCGCTCTAATTCATCCCAAAGGTGTTTTATCGGGTTGACGTCAGGACTCTGTGCAGGCCAGTCAAGTTCCTCCACACCAAACTCGCTCATCCATGTCTTTATGGACCTTGCTTTGTGCACTGGTGCGCAGTCATGTTGGAACAGGAAGGGGCCATCCCCAAACTGTTCCCACAAAGTTGGGAGCATGAAATTGTCCAAAATGTCTTGGTATGCTGAAGAGTTCCTTTCACTGGAACTAAGGGGCCAAGCCCAACCACTGCATCCGACGCTTTGCATTGCACTTGGTGATGTAAGGCTTGGATGCAGCGGCTCGGCCATGGAAACCCATTCCACGAAGCTCTCTACGCACTGTTCTTGAGCTAATCCGTAGGCCACACGAAGTTTGGAGGTCTGTAGCTATTGACTGCAGAAAGTTGGTTACTTCTGCACACTGTGAGCCTCAGCATGCGCTGACCCCGCTCTGTGATTTTACGTGGCCTACCACTTCGTGGCTGAGTTGCTGTTGTTCCCAATTGCTTCCACTTTGTTATGATACTACTAACAGTTGACCGTGGAATATTTAGTAGTGAGGAAATTTCAGGAATGGACTTATTGCACAGGTGAAAACCTATCGTGGTACCATGCTTGAATTCACTGAGCTCCGACCCATTCTTTCACAAATGTTTGTAGAAGCAGTCTACTTGATTTTATACACCTGTGGCCATGGAAGTGATTGGAACACCTGAATTCACTGATTTTGAGGGGTGTCCCAATACTTTTGGCAATACAGTGTATGTGCCAAAACACATGTAAATTGCTTAAATCAATTAGAAATCCAAATCTGATGTGAACAAGAAACTAATTGTTCAGAGACCAGAACTTATTGTTTTGAGGGGGAAAAAAAGTCTTGTTCGAGAATTGAGCCAAAGCGATTGAGAAAAACTGTAACATGTCCATGCCACCAGCTATTGCAAAATTATCTTTACAAGCTTAGCATTTGTTTAGCTTAGCATCTGGACTCACCTGCTTTTCCCTCCCTCCATCCTGGTCTTGTGGGGGATCTTGCCCCAGTTCACTTTTGCATCTCCACCACAGGCCTTCTTGCTTGAACTAATAGTAAAAGTTAGCCCTTGATCAAATGCGTTTTTCAGGTAGGGCAATAAACTCCGTCCCTTTGGGTCGAGCGGCAGATAAGCCTCAAATATACCACCTTTGAATGGTGACCCCGGACAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195763 True 2381 lncRNA 0.42 1 3928905 3931285

Neighbor

gene id symbol gene type direction distance location
CI01000034_03915853_03921269 ASB16 coding downstream 7636 3915751 ~ 3921269 (-)
CI01000034_03911480_03913846 TMUB2 coding downstream 15059 3911075 ~ 3913846 (-)
CI01000034_03803160_03827982 NGFRA coding downstream 100923 3802832 ~ 3827982 (-)
CI01000034_03659420_03661699 NXPH3 coding downstream 267206 3659290 ~ 3661699 (-)
CI01000034_03577874_03611044 NA coding downstream 317806 3577454 ~ 3611099 (-)
CI01000034_03956763_03960891 NA coding upstream 25478 3956763 ~ 3960891 (-)
CI01000034_04019323_04045212 MRC2 coding upstream 87955 4019240 ~ 4045212 (-)
CI01000034_04065210_04081772 TLK2 coding upstream 133234 4064519 ~ 4081772 (-)
CI01000034_04087755_04088054 NA coding upstream 156278 4087563 ~ 4088764 (-)
CI01000034_04090497_04095923 NA coding upstream 158947 4090232 ~ 4095923 (-)
G172314 NA non-coding downstream 54523 3870728 ~ 3874382 (-)
G172346 NA non-coding downstream 78003 3850581 ~ 3850902 (-)
G172240 NA non-coding downstream 331027 3597592 ~ 3597878 (-)
G172235 NA non-coding downstream 340548 3588156 ~ 3588357 (-)
G172234 NA non-coding downstream 342329 3586347 ~ 3586576 (-)
G172303 NA non-coding upstream 343 3931628 ~ 3932617 (-)
G172316 NA non-coding upstream 3260 3934545 ~ 3937466 (-)
G172298 NA non-coding upstream 81215 4012500 ~ 4016694 (-)
G172366 NA non-coding upstream 115390 4046675 ~ 4047140 (-)
G172297 NA non-coding upstream 132607 4063892 ~ 4064161 (-)
G172151 NA other downstream 531092 3391144 ~ 3451802 (-)
G172016 NA other downstream 692290 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1417384 2510061 ~ 2511521 (-)
G171835 NA other downstream 1482612 2441821 ~ 2446293 (-)
G171755 NA other downstream 2062532 1864118 ~ 1866373 (-)
CI01000034_04165535_04172272 KCTD13 other upstream 235214 4165373 ~ 4172272 (-)
CI01000034_04216451_04218876 NA other upstream 284927 4216212 ~ 4221881 (-)
G172593 NA other upstream 1061675 4992960 ~ 4994943 (-)
G172800 NA other upstream 1857747 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1866285 5795835 ~ 5811781 (-)

Expression


Co-expression Network