G170488


Basic Information

Item Value
gene id G170488
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4096655 ~ 4096884 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU193675
AAAAGAAATTAAGGTTTTTGATGAAAACATTCCAGGATTATTCTCCTTATAGTGGACTTCAATTGGCCCCAAACGGTTGAAGGCCAAAATTACAGTTTCAGTGCAGCTTCAAAGGGCTTTAAACGATACCAGATGAGGAAAAAGGGTCTTATCTAGTGAAACGATCGGTCATTTTCCAAAAAAAAAAAAAAAAATTATATATACGTTTTAACCATAGACGCTCGTCTTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU193675 True 230 lncRNA 0.35 1 4096655 4096884

Neighbor

gene id symbol gene type direction distance location
CI01000034_03983251_03998632 RND2 coding upstream 97770 3983251 ~ 3998885 (+)
CI01000034_03946027_03949208 NA coding upstream 146999 3945591 ~ 3949656 (+)
CI01000034_03923671_03931871 NA coding upstream 164752 3922512 ~ 3931903 (+)
CI01000034_03900854_03907256 ATXN7L3 coding upstream 188205 3900854 ~ 3908450 (+)
CI01000034_03890532_03897571 UBTF coding upstream 197460 3890438 ~ 3899195 (+)
CI01000034_04125435_04125780 RPRML coding downstream 28551 4125100 ~ 4126825 (+)
CI01000034_04149395_04151573 NA coding downstream 51689 4148573 ~ 4151726 (+)
CI01000034_04192675_04200041 NA coding downstream 95791 4192311 ~ 4200636 (+)
CI01000034_04204946_04208081 CABP5B, CABP5, CABP5A coding downstream 108062 4204946 ~ 4208307 (+)
CI01000034_04222777_04228601 GCAT coding downstream 125713 4222597 ~ 4228745 (+)
G170229 NA non-coding upstream 32505 4063892 ~ 4064150 (+)
G170482 NA non-coding upstream 33905 4062418 ~ 4062750 (+)
G170252 NA non-coding upstream 79619 4016819 ~ 4017036 (+)
G170226 NA non-coding upstream 80095 4012499 ~ 4016560 (+)
G170459 NA non-coding upstream 120666 3975767 ~ 3975989 (+)
G170504 NA non-coding downstream 23761 4120645 ~ 4120918 (+)
G170491 NA non-coding downstream 61786 4158670 ~ 4161768 (+)
G170493 NA non-coding downstream 76764 4173648 ~ 4181307 (+)
G170520 NA non-coding downstream 93163 4190047 ~ 4190411 (+)
CI01000034_03432846_03437608 NDUFA4, NDUFA4L other upstream 644806 3432846 ~ 3438839 (+)
G169806 NA other upstream 1758965 2317973 ~ 2337690 (+)
CI01000034_01729413_01730790 EVE1 other upstream 2365478 1729413 ~ 1731179 (+)
G169340 NA other upstream 2785777 1250219 ~ 1310878 (+)
G169394 NA other upstream 2903095 1150297 ~ 1193560 (+)

Expression


Co-expression Network