G172456


Basic Information

Item Value
gene id G172456
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4405635 ~ 4409237 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195928
TTTCAGACGGCACTTAGAGGCTTTTGCATCTGAACTCTTCATTTTTTTCCCATATTTTTTAAGAAACAATCTTACAACATTGTGCACACCTTTTAACTGTCTTTATGCTTTGACACACCTTAATCTCTCCCGAAGTAACAAACTCTCTTTGAGTCAAATGATTACTGGATTGGCCTGTTTATGTGTTTAATGAAGATATCAGATACATTGTGAACCTCTTGGCACATCTCCAACGATACACTGTTGTACACTGTGAAGACCAAGAAACATTCCACGCAAATCTGTGATATGACACTTGAAAAATACCAGTAAAGACAAGAGCAAAGCAAAATATGGCTTGGAGCGAAGTGAAGACCAAGTTTCACAGAATGAGAAAATATGAGAAAAACACACACACACACGTTTGTTTTTGTGAATTGTGGGGACATTCCATAGGCGTATACTGTACAAACCGTATTTTCTATCCCCCTACACCAACCCTACCCCTAAACCTACCCATCACCGGAAACTGTGCACATTTTTACTTTCTCATAAAAACTCATTCTGTATGATTTATAAGCCTTTTGAAAAATGGGGACATGGGGTCATGTCCTCATAATTCACCCTCTCCTTGTAATACCCATGTCATACCCATGTCATTATACAAATTTGTGTCCTGATATGTCACGAAAACACACACACACACAGAGTAACTCTACCCAAAACTGGCTGAACTCCAAAAATAAGTAGCTAGACAGGAAGATCCATAATGGAAACAGTTGAGAGGCCTATGGAAACCCTGAAGGAGTTACAGTAGCTGTCTGTCTGTCTATCTGTCCATCTCTATCTATCTATCTATCTATCTGTCTGTCTGTCTCTCTGTCCATCCGTCTCTATCTATCTGTCTGTCTGTCCATCCGTCTCTATCTTTCTGTCTGTCTGTCCATCCGTCCGTCCGTACATCTCTGTCTGTCTTTCTGTCCGTCCGTCCGTCCGTCCATCTCTATCTATCTGTCTGTCTGTCTGTCTGTCTCTCCGTCCATCTCTGTCTATCTATCTATCTATCTATCTATCTATCTATCTCTCTGTCCATCTCTGTCTGTCTGTCTATCTGTCTGTCGGTCTGTCTCTCCGTCCGTCTCTGTCTGTCTGTCTGTCTGTCTGTCTCTCTGTCCATCCGTCTCTATCTGTCTGTCTGTCTGTCCATCAGTATATATGTCTGTCTATCTATCTATCTATCTCTCTTTCTGTCTCTCTGTCCGTCCGTCCATCTCTGTCTGTCTGTCTTTCTGTCCGTCCGTCCATCTCTATCTATCTATCTGTCTGTCTGTCTCTCTGTCCATCTCTATCTATCTATCCATCTATCTATCTATCTGTCTCTCTGTCCGTCCATCTTTATCTATCTGTCTGACTGTCTCTCCATCCGTCTCTGTCTGTCTGTCTGTCTGTCTTCAGTTATTTATGAAATGACAGTGGGAAGAATTCTTGTAGCTGGATTTGCCCATGGGCGTTTTGGTGAAACAGACAACAAAAGGCACATTATGTGTTCAGTTATACACTCATTTTTAATTGTAATTGATTTCGTAATATCTGTATTTTATTCTTTGTCATTATAGATTGCTTTGTGTTCAGGAATGTGAACGGTTCTCAATCAAATACTTCATGATTTCATGTTGTAACAATAGAATGTGCTAAAGCTAAAAGGAGGTGAATACATTGTATTTGTACTCTACATGTGACTGATCGAGGTCAAAGTGTATGTTTGCGCATGCTAACTAAATAGCCTGATTTGCTCAAAGACCATCTGTTACTCACAGCGCAAGATCTGGTGATAATAAGGTGTGGCAAATGAACTTATCAGTTCAACACTTCCCCCTCAATACCTGTGACACAAAAACATGTCCAGGTCACATTTCATCCCTAAATTAGAAGAAAGAAATAATACTATTTTGAATGAAAAAACAGCCCATTTTGAGAGTTGTGGGAGAAAAGTGCTTAATTGTCATGAATATTGCAATGGTCCGTAAAAAGGACTAATTATCTTTATGCAGAAGTATAATTTTTTATTTCTTTCTATTGATTTTGCAATTGCATATGACCCGGATGTGTTAATTACAGGTTTTGCAAAGAGATCAGACTAAATCTTTTGGGTTTTTGCTTTGACAGTCTGTGCTGACATCATTCTAGTCAGGGTTTCGTGGTCTTCTATATTCGTCATGACTGCATTCAGATGTACTGATTCTGTATCCTGTCAGGTGCTGGGGGAGAACTTTTACTAGGCCACTGGGACCATGAGAACACAGAGACCTTAATGTTTACCTCCAACCCCTTTGATGGGATGTCATAATCAGCAGTCAGGGCAAGAGATTTTGACCAGGGTACTGTGGGAGTTTGCTTATAAAATGTGACCCTGGACCACAAAACCAGACATAAGTCGCGCGGGTATATTTGTAGCAATATCCAACAATACATTGTATGGATCAAAATTATCGATTTTTCTTTTATGCCAAATATCATTAGGATATAAAGTAAAGATCATGTTCCATGAAGATATTTTGTCAATTTCCTACCATAAATATATATAAAATATATTTTTGTGAGTGGTTATACATTGCTAAAGACTTCATTTGGACCAATTTAAATGTGATTTTCTCAATATTTTGATTTTTTTGCACCCTCAGATTTTAGATTTTCAAATAGTTGTATCTCGGCCAAATATTGTCCTATCCTAACAAACCATACATCAATGGAAAGCTTATGTATTCATTTAAAAAAAATGTCCTTTATGACTGGTTTTCCAGAGTGTCAAATATGTTTGTTCGGTTATCAAAGACATGCCTGTCAAACCTGCTCACTTTGGGTTTGTTCCAAGAAAGTCTACATTTGGGTTCTGCATGCAAAAAAACTTTATTGAGTAATTTTTAAAGGTTTTATCATGTAAGATCTAGTCTGTTTTTGCTCAACTCAGGCTTTTTATTTCATATGACTGACTCAAACTGACTACATTAAGTTATACCAGCCAAATTCATTTTTGAGGGTTAGAATTGTAGGAGCTCCACATGATTTTTATATTTTAAAAATGATTTTTGATGGGATATTAAGTTACATACTCCATTCTTTTAATCACTTCATATTCAATGTGTTTGCAGGTTAAACAGAGAATAACGCTCTCAACGTCTTCTGAAGACAATGCTGTTACTACAAACAAACTAATGTAAACTATTCAGGATGTGTATAGTCAAAAAAAAATGAAGGACACATTAAACTCCCAAACAAGCGTAAAAAAACACAACTCTTTTCTCTTACTTTCTTTTTGCAGAGTTTAATTGTTGATATAAGATATTGCTTCTGATGCTGAGTTGTTTCCCCCTCATTTTTTCTTGCTTTCACATTGATTTTTCAGCTTTTGGAACCTACTGGCAACATAAAACATTAAAGAAACTTACTTGTACACCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU195928 True 3435 lncRNA 0.37 2 4405635 4409237

Neighbor

gene id symbol gene type direction distance location
CI01000034_04392399_04400096 LDLR, LDLRA coding downstream 5539 4392200 ~ 4400096 (-)
CI01000034_04376314_04386958 NA coding downstream 18677 4376314 ~ 4386958 (-)
CI01000034_04370706_04374491 SPC24 coding downstream 30222 4370626 ~ 4375413 (-)
CI01000034_04350907_04363668 NA coding downstream 41952 4350606 ~ 4363683 (-)
CI01000034_04318823_04319740 FOXD3, FOXD1 coding downstream 85508 4318544 ~ 4320127 (-)
CI01000034_04431146_04446849 SMARCA4A, SMARCA4 coding upstream 21909 4431146 ~ 4447168 (-)
CI01000034_04451917_04454531 NA coding upstream 42222 4451459 ~ 4454531 (-)
CI01000034_04466151_04467388 RLN3A coding upstream 56615 4465852 ~ 4467480 (-)
CI01000034_04630595_04640739 NA coding upstream 221304 4630541 ~ 4640987 (-)
CI01000034_04652096_04678983 TMEM104 coding upstream 242697 4651934 ~ 4679037 (-)
G172480 NA non-coding downstream 49081 4356313 ~ 4356554 (-)
G172475 NA non-coding downstream 70862 4334149 ~ 4334773 (-)
G172422 NA non-coding downstream 113889 4291531 ~ 4291746 (-)
G172421 NA non-coding downstream 114781 4290653 ~ 4290854 (-)
G172420 NA non-coding downstream 115540 4289847 ~ 4290095 (-)
G172488 NA non-coding upstream 59697 4468934 ~ 4469211 (-)
G172504 NA non-coding upstream 89767 4499004 ~ 4499747 (-)
G172507 NA non-coding upstream 106634 4515871 ~ 4516396 (-)
G172508 NA non-coding upstream 107256 4516493 ~ 4516717 (-)
G172509 NA non-coding upstream 107666 4516903 ~ 4517633 (-)
CI01000034_04216451_04218876 NA other downstream 187893 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 233465 4165373 ~ 4172272 (-)
G172151 NA other downstream 1007822 3391144 ~ 3451802 (-)
G172016 NA other downstream 1169020 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 1894114 2510061 ~ 2511521 (-)
G172593 NA other upstream 583723 4992960 ~ 4994943 (-)
G172800 NA other upstream 1379795 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1388333 5795835 ~ 5811781 (-)

Expression


Co-expression Network