G172507


Basic Information

Item Value
gene id G172507
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4515871 ~ 4516396 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195979
CCGAATTTGTACCACAATGTAGTTCTTTGGGAAATTTCAGAATGCTTTACACAGAAACTAAAAATTTCATAAGTGGACCGGTCTATAGGTGAGTGAACAGCAGAGGACACCACTAATACCAGACTGCAAACTTTTAAAGCAAGCTCTATGTGGTCTGACTGGAAATTTCCACCTGAACTTCTGAACTTATCTCTACAGTAAATATTCCTGTAGTGCTAACCACAAAGGTCTGTGTGTGTATGTGTGTACACACATATATACATACATATGCTACCGTTCAAAAGTTTTGGGACAAAAAGTTTTTTGTTTTTTTCCAGCAAGGACACATTAAAAGTAACAGTAAAGACATTAATGCTACAAAAGATTTCTATTTTAAATGCTGATCTTTTGAACTTGAAATCTTACAGACTCCAAACTTGTGAACAGTAGTGTTTAAATATATAAATATGTCATACATAAACATACATATAATTAATTTTACGAAAGGAAGCCCACTTTCTTTCTGTTGCTTCTTTGTACCACCAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195979 True 526 lncRNA 0.34 1 4515871 4516396

Neighbor

gene id symbol gene type direction distance location
CI01000034_04466151_04467388 RLN3A coding downstream 48391 4465852 ~ 4467480 (-)
CI01000034_04451917_04454531 NA coding downstream 61340 4451459 ~ 4454531 (-)
CI01000034_04431146_04446849 SMARCA4A, SMARCA4 coding downstream 68703 4431146 ~ 4447168 (-)
CI01000034_04392399_04400096 LDLR, LDLRA coding downstream 115775 4392200 ~ 4400096 (-)
CI01000034_04376314_04386958 NA coding downstream 128913 4376314 ~ 4386958 (-)
CI01000034_04630595_04640739 NA coding upstream 114145 4630541 ~ 4640987 (-)
CI01000034_04652096_04678983 TMEM104 coding upstream 135538 4651934 ~ 4679037 (-)
CI01000034_04690669_04706837 NA coding upstream 174091 4690487 ~ 4706959 (-)
CI01000034_04710539_04725888 TNPO2, TNPO2.S coding upstream 193017 4709413 ~ 4725888 (-)
CI01000034_04823597_04824920 NA coding upstream 306925 4823321 ~ 4825135 (-)
G172504 NA non-coding downstream 16124 4499004 ~ 4499747 (-)
G172488 NA non-coding downstream 46660 4468934 ~ 4469211 (-)
G172456 NA non-coding downstream 106634 4405635 ~ 4409237 (-)
G172480 NA non-coding downstream 159317 4356313 ~ 4356554 (-)
G172475 NA non-coding downstream 181098 4334149 ~ 4334773 (-)
G172508 NA non-coding upstream 97 4516493 ~ 4516717 (-)
G172509 NA non-coding upstream 507 4516903 ~ 4517633 (-)
G172511 NA non-coding upstream 3917 4520313 ~ 4520840 (-)
G172516 NA non-coding upstream 13941 4530337 ~ 4531094 (-)
G172522 NA non-coding upstream 36905 4553301 ~ 4554337 (-)
CI01000034_04216451_04218876 NA other downstream 298129 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 343701 4165373 ~ 4172272 (-)
G172151 NA other downstream 1118058 3391144 ~ 3451802 (-)
G172016 NA other downstream 1279256 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 2004350 2510061 ~ 2511521 (-)
G172593 NA other upstream 476564 4992960 ~ 4994943 (-)
G172800 NA other upstream 1272636 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1281174 5795835 ~ 5811781 (-)

Expression


Co-expression Network