G172522


Basic Information

Item Value
gene id G172522
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 4553301 ~ 4554337 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU195994
GTTTTTTTGGCGCACAAAAAGTATTTTTGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTTAGTAGCTTTCTGGGCAAAAATATCTTAATTTGTGTTCCGAAGATGAACGTCTTGAAGGTCTTATAGGTTTGGAACGACATGAGGGTGAGTAATTAATGACAGATTTTAATTTTTGGGTGAACTAACCCTTTAATGTACAAAAACAATGACAAAGGATAACCAAACTCACATTTACCTTTTCATAAACATGATCTACCGCCAAAAAATGACATTAAACCAAGAGGAACGATTATTATTTTACACTAAGCACTTCTTCCCCAAAGAAAAACAACTATAAAAACACTTAACGTGGCAATGTACTAAGATAGTGGAAGATCAAATTCACTTTGTACCACTGATTACAGATACTACCCACAAACAAACTGATGACCCTAGAATATATACACAATGATTTTATTTTAACGTGGCACTAAAATGCCGTCATAGTCCTCAGATTGAGACAATTTAGGCCACCAGAACTGCAGCGAGGGAGACTGATGGAATTTCTCTGTCTTACTATATTCAGGAAAAGTGGGCAGCAGGGAGGCCATCTGGTGTAACGGTGGCATTCATCAGTCAGAACCTGAGATGCCTGTCACCAGTCCACTGGGTACAGCTGTGCCAGCCTGCCAATGAAAGCTTTAAACTTAGAGCTATGAAATGATAGTTCAACCCTTTAAACTCTCATCCTAGGATTCATTTCACACGTACTACAGCAGTATGTCTTTACAAGTATAAGTACATTTTGTATAGGCTAGTGGTATTGCATATCCTAATCTATTGTGCAAACTCATGTTTCCATAAATGCAAGTCTTAAGATGGTAAAAAATATGACAAACTACTATTCTCATGATTTTGACAGTGTACCAGACTAAAGTTAATAAACACATCACAGACAAAACAACTGGGATTAAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195994 True 976 lncRNA 0.37 2 4553301 4554337

Neighbor

gene id symbol gene type direction distance location
CI01000034_04466151_04467388 RLN3A coding downstream 85821 4465852 ~ 4467480 (-)
CI01000034_04451917_04454531 NA coding downstream 98770 4451459 ~ 4454531 (-)
CI01000034_04431146_04446849 SMARCA4A, SMARCA4 coding downstream 106133 4431146 ~ 4447168 (-)
CI01000034_04392399_04400096 LDLR, LDLRA coding downstream 153205 4392200 ~ 4400096 (-)
CI01000034_04376314_04386958 NA coding downstream 166343 4376314 ~ 4386958 (-)
CI01000034_04630595_04640739 NA coding upstream 76204 4630541 ~ 4640987 (-)
CI01000034_04652096_04678983 TMEM104 coding upstream 97597 4651934 ~ 4679037 (-)
CI01000034_04690669_04706837 NA coding upstream 136150 4690487 ~ 4706959 (-)
CI01000034_04710539_04725888 TNPO2, TNPO2.S coding upstream 155076 4709413 ~ 4725888 (-)
CI01000034_04823597_04824920 NA coding upstream 268984 4823321 ~ 4825135 (-)
G172516 NA non-coding downstream 22207 4530337 ~ 4531094 (-)
G172511 NA non-coding downstream 32461 4520313 ~ 4520840 (-)
G172509 NA non-coding downstream 35668 4516903 ~ 4517633 (-)
G172508 NA non-coding downstream 36584 4516493 ~ 4516717 (-)
G172507 NA non-coding downstream 36905 4515871 ~ 4516396 (-)
G172458 NA non-coding upstream 8957 4563294 ~ 4577218 (-)
G172527 NA non-coding upstream 9937 4564274 ~ 4565093 (-)
G172535 NA non-coding upstream 45911 4600248 ~ 4600464 (-)
G172539 NA non-coding upstream 51736 4606073 ~ 4606447 (-)
G172541 NA non-coding upstream 53186 4607523 ~ 4607776 (-)
CI01000034_04216451_04218876 NA other downstream 335559 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 381131 4165373 ~ 4172272 (-)
G172151 NA other downstream 1155488 3391144 ~ 3451802 (-)
G172016 NA other downstream 1316686 3234963 ~ 3236615 (-)
CI01000034_02510595_02511512 NA other downstream 2041780 2510061 ~ 2511521 (-)
G172593 NA other upstream 438623 4992960 ~ 4994943 (-)
G172800 NA other upstream 1234695 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 1243233 5795835 ~ 5811781 (-)

Expression


Co-expression Network