XLOC_009152 (CU013548.1)


Basic Information

Item Value
gene id XLOC_009152
gene name CU013548.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19581907 ~ 19583015 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00018008
attgatttatcaacttctaatactttttaaagagcccctattgtgggttttgaaaatgagcttccatgtagtgtgtaacacagatctaagtgaagtgaaatatccagctaaggcttaaatctgaaagtggacagttttaaaaactattgattcatctaaaaaaaagagtcgactcattatggttagaatgaatcgtcttcataacgagtctttagccgttttaACGTGACGTGACTACGAAACATAGTTGTTATGGGCGCAAACCcaggaaaatttaaacctgcgtCCCGTCCACTAACACAGCCTCGAAGACAAACAGATCCTGAAGTCATGAGTCAAGAAGACGCTGTGCTtgcctggatattattggaagtgtgaggggaaataattgattcagcagtctacacgCTTACAGAGGGCGATTCATCCGTTTgataaaggaaggatcagaaaagactggtGTATGAGACTTGTGAGAATGAGCAGACAATACACCAGGCGTGCAtgcaaaataaggccagtttattaTGCATAAAGGCAGCCTGCTACAATCTGGTGAGCACTACAACCCCTTGGCTGGGGATGGGATCTTTGGGCAAAGCAGAGTACAGGTAAGCCCTGAGAACATAGAACACTTCACGCAAGAGGTGCCACAGCAATAATTGCAAATAGAAATGATCTAAGTTACAGCTGAGAAGGGAGAAAAGCTCAGTCACGGAAATCACGCTcagtaaatgatgtgcacgctatcagtttcattttcactgctaagtgccgTTCATACTTCCCGTGCAGGGGGTTATGACGGTCACAGGGTTATCGCGCGGGCCGTCCGCCGGGGGCTTGAAAAACCTGGCATTTGTTTAgcgctgaacgctgtcgaccaatcgcaacaggctgtcatcggtctaatcagtgcagattagcttcgcgctaaggaggggtttgggaacaaatgaatcgctgaacaattcatataggagtcgctgggataattgggtaaaaataaatgcatattataagaccatgaaagtgttttttgaccttgcatgcatatcagtatgttgttggagaccaTATAActgaaatatgaccctttttatgTATAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000096837

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00018008 True 1109 lncRNA 0.43 1 19581907 19583015

Neighbor

gene id symbol gene type direction distance location
XLOC_009151 BX324151.1 coding downstream 38973 19542820 ~ 19542934 (-)
XLOC_009149 esamb coding downstream 137910 19353693 ~ 19443997 (-)
XLOC_009150 BX324206.1 coding downstream 224518 19357270 ~ 19357389 (-)
XLOC_009148 thyn1 coding downstream 247459 19331159 ~ 19334448 (-)
XLOC_009147 NA coding downstream 295307 19285164 ~ 19286600 (-)
XLOC_009153 hspa8b coding upstream 78483 19661498 ~ 19677511 (-)
XLOC_009154 si:dkey-4p15.4 coding upstream 95757 19678772 ~ 19681870 (-)
XLOC_009155 sytl2b coding upstream 114231 19697246 ~ 19724932 (-)
XLOC_009156 picalmb coding upstream 143214 19726229 ~ 19772372 (-)
XLOC_009157 NA coding upstream 201476 19784491 ~ 19793611 (-)
XLOC_009145 AL845312.1 non-coding downstream 486800 19094511 ~ 19095107 (-)
XLOC_009135 CR388163.1 non-coding downstream 1401083 18177941 ~ 18180824 (-)
XLOC_009158 CR848757.1 non-coding upstream 346480 19929495 ~ 19932848 (-)
XLOC_009163 AL928724.1 non-coding upstream 655413 20238428 ~ 20239598 (-)
XLOC_009164 NA non-coding upstream 670728 20253743 ~ 20281793 (-)
XLOC_009166 CR626887.2 non-coding upstream 761897 20344912 ~ 20345732 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G76112 NA non-coding NC_056708.1 CM032077.1 9570431 ~ 9572283 (-)