CI01000040_05916108_05961765 (WWC1)


Basic Information

Item Value
gene id CI01000040_05916108_05961765
gene name WWC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 5915872 ~ 5962028 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_05916108_05961765.mRNA
AGAGCATCACACCCTCATCCATTCATTTAACATCATTTGCGTGTGAAAACAATGCTCAATATAGGCTGCACAAACTGAACTGGAATATTGGAACACGTGTCATGGATCATATGGAATAAAACTCTGTCAGTGGTTAATTAATGGCACTTTCCTTATGCGTTGGGTTTAACTTCTTTGGACTAGTCCACGCAAAGCAACACATGGTTTGCTTTCAAATCAATTTAGAAGACTTACAGAGAAAATTACATGGAGACTAGTTGGTCATGCCAAGGAAGGAGTTACCATTGCCAGAGGGTTGGGAAGAGGCCCGAGATTTTGACGGGAAGGTCTATTATATAGACCATATTAATCAAACCACCAGCTGGATTGACCCAAGGGATAGGCAGACTAAGCCTCTGACTTTTGCGGACTGTATTGGAGATGAGCTGCCTGTGGGATGGGAGGAGGCCTACGACCCCCACGTTGGAGCCTATTATGTCGACCACAATACCAAGAGCACTCAGTTGGAGGATCCGCGTGCTCAGTGGCAGAGGGAGCAGGAGCTCATGTTGCGGGATTATCTGAGCGTGGTTCAGGAAGCGTTGAGCGCCCAAAAGGAGATCTACCAGGTCAAAGAACAGCGACTTCGCCTGGCCCAACAGGAATATCGGCAGCTAAATGATGCTTGGAGGGACAAGTCGTCTTCGCAGACCAGCTTAAATTCCAGATCCTCATCAAGCAGTAAATATGACCCTGAAATCCTCAAAGCGGAGATTGTTACAGCAAAAAGCCGGGTAAATAAGCTGAAGAGAGATTTGGCCTTTATGAGGCAAGAACTACTTTATAAGGAGCAAGGCTTTGAGACATTGAAAGAAATTGATCACAAAGTGTCCAGTGCCTCGCATGGCTACAAACTGCATGAAGCCCAGGCCATCCTGAAGGAGGTAAAGACCATTAAAGATGCCATCAGCTCTGGGGAAAAGGAGAAACAGGAGCTCATGCGGAAACTGGCTGTACTGAAGGATGATTTCCAGTTAGATTATGGCTCTCAGTCTGACCTGTGGGCCAGCAATCCGTCCCTGGCCAACTCAAACCTCTCTCTGCCCCGTCTCTACTCAGATGCCGAGTCTCAAACAGACATACCTGCTGAGTTTGTATCAAGCTCAAATAAACTGGCTGAGAAGGTACGACTGAGTCTGAAATATGAGGAGGCAAAAAGAAGGATTGCAAATATTGAGGTCCAGATTGCTAAACTGGATAGCGAGGCATGGCCGGGCCTTCTGGACCCAGAGAGAGATCGCTTAATCCTCATCAACGAGAAGGAAGAGCTGCTAAAGGAACTGCAGTATGTAAAGCCATGCAAGCGCGCACCCAGCGAGGCAGAGAAGATTGAATCTGAAAAGAAACGACTCGAGAAGGACCTGCAAGCTGCACGGGACAACCAGAGCAAAGCACTGACCGAGAGGCTAAGGCTGCACTATAGGAGAAACAAACTAGTGAAGGAGCTGGAGGAGACGGTGAGGTTGGCGTCTTCCCTGCACACCCAGCTGAAAAGCAGCCGTGGATCACTGACTTCCAGCCGAGGATCCCTGGCCACCTCCAGCTTAGGCTCCACTTCCTCTCTCAGCTTCACCGACATCTACCTGGAGCAGCCTGAACTGGGCGACCCTGACTTCCAGAACAAACTGGACTCTATTTTGCAGGAGGGAAGCACCTCTGGCTACAGGCCCTCCAGCTCCATCACCACCATCCATGAGAATGAGGTCTCATCCTCATCCAGGCAGGTGGGCGGAGAGGCCTTTTCTGGTCCGGCCTCACAGTTGGATTTAGATCTGCAAACCAGGCTGATGGAGCTCCGGCTAGATGAGGACCAGCAGCAGGGGCAGCTGGCCTACCGTGACAACAAACAAGACAACATTATGGCCGCAGTAGAGTCTTCGAAAGATGCTGTTACGCAAATGAGGGTGCCCGGGCCTGGATCGAAGAAGGCGGGAGTAACGTCGGCAGTGTCTGACGAATCGGTTGCAGGTGACAGTGGGGTATACGAGCCCTCAGAGAAAAGGCCTGGGCTTCCTGTCGAGCAGCTGCTGGGTTATGATGACGGGAGCTCAGCAAGCAGCGCTCAGATCAAACTCGGCCTGAAGTATGAAGCGAAAGAGAAGAAGTTCACAGTGTTCGTAATGCAGCTCTCCAACTATAGCGCGCTCTCCCTGCCAGCCAACCAGAACATATATGTTCGTGTGGTGGTGCTGCCGTGCTCAGAGCCCGTTCGGTGTCTGTTCCGCACCCACGGCGCTCTACCGCAGGAACACTTAGAGCTCAAAGAAGCTTTTAGCTTGCAGATGTCCTCCACTGCTCTCAGACAGAAGACCCTACGCATTGATGTCTGTACCACCAGCAAATCTGGCCGAGAGGACTGCCTAGCTGGTGCTCAGATCAGTTTGGCTGATGAGGAGTATTCAGAGGAGTGGTGCTCCAAGTGGTACAACCTCCTCAACTGCACGTACATGCCAGAAATGGATAGAAAGCACAAGGAAACAGAGGTCTCCGCTCAGCAGGAGCTGACTTCAGCTCCCAGCACCTCAGAGACCACCACTGCACACCTGGAGAACGTTCCTCTGGAGGACTGGCCCACAGAGGCTTTAGAGGGTGACGTGTTTATGGATGGAGAATGCAGTGACGTTGAAGAGGACGAGGAGTTCTACCCCGATGAGTGCCAGTGGGAACAGGAGGAAGAGCCAGTTAAACCTGGACCAACAACAGTCATAACGGAAAAGGTGAATAAGGAGACAAGTATGGATGGACTCCCCCATTCTGCTTCTGTAGTTCGGCCTAAGGAGCGACGACATGATGTTCATCAGCAAAACCCTTTTATGCGAGGAAACACCATCATCCGGTCCAAGACATTTTCCCCTGGACCTCAAAGCCAGTATATCTGCAGGATCAACCGCAGCGACAGTGACAGCTCCACCCTTTCTAAGAAATCTCCATTCGTCCGGAACGCTTCTGAGAGACGCAGTGTTCGAATGAAGAAGCCACCCATGCAGGTCAAAGGTCTGGACGGGCTTCTGCGCACTTCTCTGGATCTGGAGCTAGACTTGCAGGTCACTCGCACACGGCACAGCCGATTGAATGAGGAACTGCGTGTGCTGCGGGAGCTAAAGGAGCAGTTGGAGAACGCCCGACAGCAGGGCCAGCACGTCCTCCCCACATGGGTACAGGAGGATGAGCGCTTTCGTCTGCTGCTCAAACATGCAGAGAGACAGACCCAGGAAGAGCAGCTACAAGAACAGAGGGTAGAGAAGATGATGCGAGCAGCAGCCAAGGATGTGCACAAGATCCGTGGGCAGAGCCTCAAGGAGGTCCCTGGGGTCCAGTCCTTTAGAGAAAAGATGGCCTTCTTCACCAGAGCGAAGATAAACGTTCCTGACCTACCAGCCGACGACGTGTAGAAGATATCCTTAACTGCTTCTGTTTCCATGGAGACAAAACTGACATCTTGTGGTATTATGAAGAATGAAGAATGGTGTGACAGGAAAATGTATGTTGGGCAGGAAAAATGTCATTTTAAAACACTGGGTTTTAACTCTCAAAACTGAAATTGTATAGATCCGTGTTTTTTTTTTTTTTTTGTTTTTTTTTAGATAGATTTATTTTTTAAATTTCACCATGTTCTGTTACTAATAAG

Function

symbol description
wwc1 Predicted to enable kinase binding activity and molecular adaptor activity. Acts upstream of or within otic vesicle development and otolith formation. Predicted to be active in cytoplasm. Orthologous to human WWC1 (WW and C2 domain containing 1).

GO:

id name namespace
GO:0071599 otic vesicle development biological_process

KEGG:

id description
K16685 WWC1; protein KIBRA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_05916108_05961765.mRNA True 3667 mRNA 0.50 23 5915872 5962028

Neighbor

gene id symbol gene type direction distance location
CI01000040_05909175_05910454 CNOT8, CNOT7 coding downstream 5418 5908714 ~ 5910454 (-)
CI01000040_05865054_05868808 MRPL22 coding downstream 47064 5864997 ~ 5868808 (-)
CI01000040_05761106_05766999 NA coding downstream 148873 5759957 ~ 5766999 (-)
CI01000040_05422744_05511374 SGCD coding downstream 404498 5422605 ~ 5511374 (-)
CI01000040_05290906_05309503 NA coding downstream 606369 5289368 ~ 5309503 (-)
CI01000040_05977984_05981590 NA coding upstream 15552 5977580 ~ 5982928 (-)
CI01000040_06066026_06096365 DBN1 coding upstream 103906 6065934 ~ 6096365 (-)
CI01000040_06134860_06137499 NA coding upstream 172347 6134375 ~ 6137650 (-)
CI01000040_06149714_06150666 NA coding upstream 187287 6149315 ~ 6151064 (-)
CI01000040_06159849_06174033 NA coding upstream 197532 6159560 ~ 6174033 (-)
G187836 NA non-coding downstream 54534 5861114 ~ 5861338 (-)
G187835 NA non-coding downstream 55221 5860438 ~ 5860651 (-)
G187827 NA non-coding downstream 55895 5834761 ~ 5859977 (-)
G187820 NA non-coding downstream 106830 5808692 ~ 5809042 (-)
G187490 NA non-coding downstream 114003 5801480 ~ 5801869 (-)
G187853 NA non-coding upstream 39546 6001574 ~ 6003160 (-)
G187865 NA non-coding upstream 75519 6037547 ~ 6037759 (-)
G187867 NA non-coding upstream 78053 6040081 ~ 6040388 (-)
G187869 NA non-coding upstream 80082 6042110 ~ 6042377 (-)
G187873 NA non-coding upstream 84373 6046401 ~ 6046651 (-)
G187348 NA other downstream 350319 5562655 ~ 5565553 (-)
G187207 NA other downstream 628954 5264193 ~ 5286918 (-)
G185681 NA other downstream 2570992 3344475 ~ 3344880 (-)
G185593 NA other downstream 2923189 2992188 ~ 2992683 (-)
CI01000040_02595281_02596387 FGF1B other downstream 3319448 2594895 ~ 2596728 (-)
G188009 NA other upstream 379499 6341527 ~ 6342701 (-)
CI01000040_06423141_06425495 RBMX2 other upstream 460825 6422853 ~ 6425495 (-)
G188226 NA other upstream 741173 6703201 ~ 6783675 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019760 wwc1 coding NC_007132.7 CM002905.2 36465939 ~ 36571804 (-)
bowfin (Amia calva) AMCG00011521 wwc1 coding CM030133.1 CM030133.1 28823658 ~ 28851487 (-)