CI01000040_06423141_06425495 (RBMX2)


Basic Information

Item Value
gene id CI01000040_06423141_06425495
gene name RBMX2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 6422853 ~ 6425495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_06423141_06425495.mRNA
TCCGCTCACCAAAGTGAAACTCATCAATGAACTGAATGAAAAAGAGGCTGAACTGGGTGTCAAAGACAGTGTGTCCTGGCATTCAGTCTATAAAGACAGCGCCTGGGTCTTCATCGGTGGATTTCCATATGAGCTGACAGAAGGAGACATCATCTGTGTTTTCTCTCAGTACGGAGAGATTGCCAACATCAACTTGGTGCGAGATAAGAAGACGGGCAAATCCAAAGGATTCTGCTTCCTGTGTTATGAAGATCAAAGGAGCACCATTCTGGCTGTGGATAACTTTAATGGAATCAAGATTAAGGGCCGAACCATACGTGTGGACCATGTTGCAAATTATCGACCACCAAAGGACACAGATGACATCGATGATATCACTAAACGTTTGCGAGAGGAGGGATGCGCTCCCAGTGTGCCCCCACCTTTCTTCTCTGAGTCCGAGTCTGAGGAAGATTATGCTGTACCTGTGAAAAAACAAAAAAAAGGTGAGAAGAGGCTGTATCTGTTCAGTAAAAATGTTTAACAGGGTGTAACGGTACAAAAGCATGACGTTTCGGTACGTGCCTTGGTATTGAAGTCACGGTTTGGTACTGGTTCAGTACAGCAAGGGGGAGAAAAATAAATATAAAATTGCTTCTTTTAAACAGTGGTTTATTGATGTGTCTCAAATTGTGTCTCAATTATAATTGATTTATTTAAATAAA

Function

symbol description
rbmx2 Predicted to enable RNA binding activity. Acts upstream of or within mRNA splicing, via spliceosome. Predicted to be part of U2 snRNP and precatalytic spliceosome. Is expressed in blastodisc and central nervous system. Orthologous to human RBMX2 (RNA binding motif protein X-linked 2).

GO:

id name namespace
GO:0000384 first spliceosomal transesterification activity molecular_function

KEGG:

id description
K13107 RBMX2, IST3; RNA-binding motif protein, X-linked 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_06423141_06425495.mRNA False 704 mRNA 0.42 4 6422960 6425495

Neighbor

gene id symbol gene type direction distance location
CI01000040_06364842_06368728 RAB24 coding downstream 52899 6364648 ~ 6370061 (-)
CI01000040_06250932_06258667 FGFR4 coding downstream 163515 6250565 ~ 6259445 (-)
CI01000040_06187028_06199992 NA coding downstream 222968 6186675 ~ 6199992 (-)
CI01000040_06159849_06174033 NA coding downstream 248927 6159560 ~ 6174033 (-)
CI01000040_06149714_06150666 NA coding downstream 271896 6149315 ~ 6151064 (-)
CI01000040_06430248_06431402 NA coding upstream 4665 6430160 ~ 6432320 (-)
CI01000040_06493709_06497062 NA coding upstream 68092 6493587 ~ 6497279 (-)
CI01000040_06610496_06611957 NA coding upstream 184977 6610472 ~ 6612605 (-)
CI01000040_06717036_06733573 KLF8 coding upstream 291354 6716849 ~ 6733573 (-)
CI01000040_06805906_06806721 CLDN2 coding upstream 379867 6805362 ~ 6807934 (-)
G187944 NA non-coding downstream 67386 6354711 ~ 6355574 (-)
G188010 NA non-coding downstream 79012 6342832 ~ 6343948 (-)
G187982 NA non-coding downstream 113017 6309735 ~ 6309943 (-)
G187981 NA non-coding downstream 113423 6309317 ~ 6309537 (-)
G187955 NA non-coding downstream 142787 6279925 ~ 6280173 (-)
G187942 NA non-coding upstream 860 6426355 ~ 6426630 (-)
G187937 NA non-coding upstream 9050 6434545 ~ 6438154 (-)
G187927 NA non-coding upstream 31673 6457168 ~ 6459710 (-)
G187936 NA non-coding upstream 49759 6475254 ~ 6486334 (-)
G188047 NA non-coding upstream 80308 6505803 ~ 6506017 (-)
G188009 NA other downstream 80259 6341527 ~ 6342701 (-)
G187348 NA other downstream 857407 5562655 ~ 5565553 (-)
G187207 NA other downstream 1136042 5264193 ~ 5286918 (-)
G185681 NA other downstream 3078080 3344475 ~ 3344880 (-)
G185593 NA other downstream 3430277 2992188 ~ 2992683 (-)
G188226 NA other upstream 277706 6703201 ~ 6783675 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019100 rbmx2 coding NC_007132.7 CM002905.2 38638979 ~ 38647743 (+)