G187936


Basic Information

Item Value
gene id G187936
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 6475254 ~ 6486334 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU213416
GCTGCTAATGTCTTGGTGCCAGATACCACAGGACATCTTCAGGGCGCTTGTAGAGTTCATGCCTCGGCGGGTCGGCGCTGTTTTTTGCAGCACGGAGGACCAACAGCATACTAGGCAGGTTGTCATAATGTTTTGGCTCATCGTTGTGTGTATATATATTCATATTTTATTCTGTAATGTCTTCATTTTTAGCAGCCATTACTCCAGTATTTAGTGTCACATAATCCTTCAGAAATCATTCTAATATTCTGAATTATTATTAGTTGAAAATGGTTGTGCTGCTTAATAAAGAGTGAAAAGTGTTTCTTCCCCACATTTTGATAAATAGAAAGTTCAAAATGTCTTTAATGTCTTATAAATGTCTTTATTGTCATTTTTGATCAATTTAATGCATCTTTTCCAAATAAAGTATCAATTAAAAAAAAAAAAAAACTTACTGACCCAGACTTTTTAAATTGTAGTATGTATGTAATATTAAATTTAATAAATTATCCAGTAAACTCAGCTTTACATGAGCATTTGTAGTAATTTATTATTATTATTATTATTTTTTTTTTTTTTTTTTTTTGTGGCTGCTGTACCTTTAAGACCTCTATGTAAATGCCCTTCTTTTCTAAAAGCTTAGTTTTTTCTTAAAATATCATAGAACATTTAATAATTTACATGACCCCTTTTAAGAGACCATGGTAAAAAGCCATTTCTACACTAAACCTGGAGAAATGCCTCCCATTCCAAACAATTTCAAGTCTTACAATCTAGATTAGTCGTGTGGTGACCTCTCCTGTTCTCTCAATGACGACGGTCCTGTCCTCTTTAATGGGTGGTGTGTACTGGTAATCGTCACTCAGCAGACCCAGTATAGGGTACTGGTTCATGTATCTCTTGGTAACAACAGTCCTCGTTGTACTGCTGGAGTTGTCAACCTTCTGCTGTTTGAGTCGCTTGATCTCCTCCTCCTGGTGTCTGATGACGCTTTCACGTTGCTCCAGTTTGGACAGGAGCTCAGTGATGCGCAATTCCAAGGTGCTGTCAGTGGTGTGTGTTATGGTGCGCTCGGTCTGGATTTTTATAAGCTGAGTCCGCAGGTTCTTGAGTTCTTTGTCCTTCTCTGCCCGTAGATCATTCAGCATCTGTTCATACTCTCTAGACAGCTCCTGTGTTTTGATTTGGACAGTGGAACTACTGCACTGCCCTGCCAACTTCTTCCTGAGTAGCTCATTCTCCTGCTCCAGGGCTCTCTTGCTGCCCTCCAGTTCTTTGATGCGGAAGTCTTTGTTGGGGTCTTTGCTCTGGAAGGTCAGTAGCTGACTTTCTAGAGTACGTTGAGCATTGTTACTTTCCTTCACAGCCGCCTGCAGTTGTCTGTTGTGCTCACGTACGGTCTCCAGTAGTCTGTCATATTGCAGAGCCTGATCTGCCTTAAAGCTCAGATCTCTCTCCAGCTCCTCCTTCTCACTCTCCAGACGCCTCAGATCCTCCTGCATATGCACTAGCTCCTCTCGCAGACTGCTGAACGTGGCCATCAACAGACGCATTGTCTTATCAGCCGTCACACGAGTTTGCAGCAGGTAGCGGATCTGTTGCTTAGTCAGTTCGGACACTCCTTTAGGAATAAGACTCTCTATTTCTTCTTTTTCCACCTTGTAATCAATGGTGGGGTCCAGAAGGTGTTTCCTTCCCCGGATCTTCGCCACATGCTCGGAGATGCAGGTGTGAATATCGGAGTTCTTGCGATAAACCTCGGCAAGAAGCTCACCAAAGAAGCGGTTGTCCAGCTTGGCGACCGGTTCCACCTCGATTACCTCGGTCTTGATCTCAGTCGAGAAGCCATTCTTTATTTCTCTTAAGTCCACGACTTCCTCCCGAAAGCTTGAACTCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU213416 True 1881 lncRNA 0.42 10 6475254 6486334

Neighbor

gene id symbol gene type direction distance location
CI01000040_06430248_06431402 NA coding downstream 42934 6430160 ~ 6432320 (-)
CI01000040_06423141_06425495 RBMX2 coding downstream 49759 6422853 ~ 6425495 (-)
CI01000040_06364842_06368728 RAB24 coding downstream 105193 6364648 ~ 6370061 (-)
CI01000040_06250932_06258667 FGFR4 coding downstream 215809 6250565 ~ 6259445 (-)
CI01000040_06187028_06199992 NA coding downstream 275262 6186675 ~ 6199992 (-)
CI01000040_06493709_06497062 NA coding upstream 7253 6493587 ~ 6497279 (-)
CI01000040_06610496_06611957 NA coding upstream 124138 6610472 ~ 6612605 (-)
CI01000040_06717036_06733573 KLF8 coding upstream 230515 6716849 ~ 6733573 (-)
CI01000040_06805906_06806721 CLDN2 coding upstream 319028 6805362 ~ 6807934 (-)
CI01000040_06814968_06816636 NA coding upstream 328620 6814913 ~ 6817552 (-)
G187927 NA non-coding downstream 15544 6457168 ~ 6459710 (-)
G187937 NA non-coding downstream 37100 6434545 ~ 6438154 (-)
G187942 NA non-coding downstream 48624 6426355 ~ 6426630 (-)
G187944 NA non-coding downstream 119680 6354711 ~ 6355574 (-)
G188010 NA non-coding downstream 131306 6342832 ~ 6343948 (-)
G188047 NA non-coding upstream 19469 6505803 ~ 6506017 (-)
G188049 NA non-coding upstream 25364 6511698 ~ 6511931 (-)
G187930 NA non-coding upstream 30958 6517292 ~ 6520780 (-)
G188051 NA non-coding upstream 35570 6521904 ~ 6522237 (-)
G188052 NA non-coding upstream 36795 6523129 ~ 6523431 (-)
G188009 NA other downstream 132553 6341527 ~ 6342701 (-)
G187348 NA other downstream 909701 5562655 ~ 5565553 (-)
G187207 NA other downstream 1188336 5264193 ~ 5286918 (-)
G185681 NA other downstream 3130374 3344475 ~ 3344880 (-)
G188226 NA other upstream 216867 6703201 ~ 6783675 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019780 pof1b coding NC_007132.7 CM002905.2 38509465 ~ 38582061 (-)