CI01000040_06250932_06258667 (FGFR4)


Basic Information

Item Value
gene id CI01000040_06250932_06258667
gene name FGFR4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 6250565 ~ 6259445 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000040_06250932_06258667.mRNA
ACACTTTTATTGATTACATTAAATTCCAGATTTCATAATTCCTTTCTGCCTGTGGTTCGGTTAAAGTTTACTTGCGCTCAGAATTACTTTCATTAACTTTACCAACTCGTTTCACACTTGTAAAAGGATTTATTTAACTTAACCAAACTCTCACTCCGGTGTGAAATTCTCGCCTGTTTTGAGAACACATGTGTCTCCTTGTACCCTGAGAGCTTGACGTTTGCTTTTATTTACCTCTCATGCTGAGCAAAATAAGTATTTTAGAAGCACATTTGGAGTAAGTAATAAGCGGAAAAATCTTAAATGTAGCCTACATACGATTGATTTTCGTCTAAAAATATCTTTGTAAAAGTTCTGAGTTTGGACAACTAGTTGTTGCAGTCGTAGATGTTCCGGATCCAATTCATGTGTTTATATAGAAACGACCCATCAAAAGCACGTTGTACAGGTTCTATTCATAAACAACTGTCCTTAACTGCTGCGCATTCGTACCTGAGGGTTATTCATGTACAAGAGGGAGGTAGACAATGTCCAACAATGATGTAGGTGTACAATAGGACATTCATTTTTAAATGTGGTTTTGTGCAGGGTTGGTATGTGCAATGAATTATGCATTTATGTCATTTTAAAGGTTCATCTTTCACAATAGTTTCTGTGAATTGTAAATCAGTTCTGTTTTTCTCTCAGGTTTGTGACTACACTGAGGTTGCCAATGCCTGGAGTAAGCATTTAAAGCTGACCAGCAGTCTTCCACACACACAAACATTACCTCAGCAAGATGTTGAGCATCTTTAAGGTTTTCATTACCATCTGCTTCACGGAACTGGTGTTTTCAAGAAGCATAACATCTGGGGAAGTCCGGGCAAAAGATATCCGAGTTTCTCGACCAATTCTTATTCCTGGATTTCCTGAGAATGCTACTGTGTTAGTTGGAGGACATGTGAAGCTGGTGTGTAAACTCCACCAGCCAGCCTCAACACGTCTCCAGTGGTTCAAAAAGGACAGCAATCGCCAGGGGCCTGACGGATCACCACTTCTTACAGCGCTTACGCCTCTTCTTGAGAACCTCTCCAAAGTCAACATACTTCCTTTAGTGAATGTCTCAGTGGAAGATGCTGGAGAGTACGTATGCAAGGCAGAAAACTCAGTTGGGCTGATCTGCCATCATTCTCTGACAGAAGTTTCTGAAGAGCCAACTGAGGAAACGTCAGAGCATCTACTTCTAGAGCTTGGAGATGTACTAAAACTCCGTTGTGACACAAACCGTCCTGGAGCTGTCCAGTGGTTCAAGGGTGGTGTACGGGTGCAACATAATGCTCGTATCCAGATAAGGGCAGCAGTCATGGAGATTGCGGATGCCACCTATGAAGATTCAGGAGTGTATGTGTGTATGTTGCGTGGCACCAAAGAGGCTCTACGCAACTTCACTATCACAGTGGCAGATGCTGTAGGATCAGGAGATGATGATGAGGACAATGGTATTGATGACACTGGTCCTGAGACCGAAAATGACCAGGTCTACATCTCCAGAGCACCATACTGGACTCATACTCAAAGGATGGAGAAGAAGCTCTATGCAGTCCCAGCTGGAAACACTGTCAAATTCCGCTGCCCTGCCACAGGGAACCCTCTTCCCACCATTCGCTGGCTAAAGAATGGCAGAGAATTCAGAGGAGAGCACCGGATTGGAGGCATCAAGCTACGACATCAACACTGGAGCCTGGTCATGGAGAGTGTGGTTCCCTCAGACCGTGGGAACTACAGTTGTGTGGTGGAGAACAAATATGGGTCCATTGCTCACACCTACCTCTTGGACGTGTTGGAACGCTCTCCACACAGGCCCATCCTTCAAGCTGGTCTACCCAAAAACACTACAGCTGTAGTGGGTGGAGATGCTCAGTTTCTGTGTAAAGTCTACAGCGACGCCCAGCCTCACATCCAGTGGCTAAAGCACATAGAGATGAATGGCAGCCGTTATGGGCCTGATGGCATTCCTTATGTGAAGATCGTGAAGACAGGAAGCTTGAACATGTCTGAAGTTGAAGTCTTATATCTTACCAATATTACAATGGAGGATGCTGGGGAATACACTTGCTTGGCAGGAAACTCTATTGGATTCTCTCATCAGTCTGCTTGGCTTACAGTCTTATCAGAGGAGGACGTGGCCAAGGAGATGGACCTTATGGAGTCCAAGTACACTGACATCATCATCTATGCATCTGGCTTCCTGGCACTGGTAATGGCCATAGTTATTGTGGTCCTCTGCCGCATGCAGGTTCATCCCAGTCGGGAGCCTTTTGATACACTCCCAGTGCAGAAACTCTCCAAATTTCCTCTACGCAGACAGTATTCTGTGGAGTCCAATTCTTCTGGAAAATCAAGTGCGTCACTCATGAGGGTGGCTCGTCTTTCCTCCAGTTGTTCCCCAATGCTGGCTGGAGTTATGGAGTTTGAACTGCCTTATGACCCTGACTGGGAGTTTCCGAGAGAGAATTTGACTTTAGGGAAACCACTTGGAGAGGGCTGTTTTGGTCAAGTGGTGAGAGCTGAGGCTTATGGGATAAACAAAGAAAATCAAGATCAAGTGGCAACGGTAGCTGTTAAAATGCTAAAAGATGATGCAACTGACAAAGACCTGGCAGACCTCATCTCTGAGATGGAGCTAATGAAGGTGATGGACAAGCACAAGAACATCATAAATCTTCTTGGTGTTTGCACACAGGATGGTCCACTCTACGTGCTGGTTGAATATGCGTCTAAGGGCAGCCTACGGGAATACCTCCGAGCACGTCGACCTCCAGGCATGGACTACACCTTCGATGTGACCAAGGTTCCTGAGGAACAGCTCACCTTCAAAGACCTAGTTTCCTGTGCCTACCAAGTAGCAAGAGGAATGGAGTACCTGGCCTCCAAAAGATGTATTCACAGAGATTTAGCAGCAAGGAATGTTCTTGTGACAGAGGACAATGTGATGAAAATTGCAGATTTTGGTTTGGCAAGAGGAGTGCATCAGATCGATTACTACAAAAAAACCACCAATGGACGTCTGCCAGTGAAATGGATGGCACCAGAAGCCTTGTTTGACAGAGTCTACACACACCAGAGTGATGTTTGGTCTTTTGGAGTTTTGATGTGGGAGATTTTCACACTGGGGGGATCGCCGTACCCTGGGATACCGGTAGAGGAGCTTTTTAAGCTGCTGAAGGAAGGTCATCGAATGGACAAACCTTCCAACTGCACACATGAACTCTACATGAAGATGAGAGAGTGCTGGCATGCAATACCAACACAAAGACCAACATTCAAACAGCTTGTGGAAGAGCTTGATAGGGTGCTGGTGTCCATTTCAGATGAGTACCTGGACCTATCCACCCCTTTCGAACAGTACTCCCCATCTTGTGAGGACACCTCCAGCTCTTGCTCTTCAGACAATGATTCAGTGTTTACCCATGATGCTATGTCAACTGTCCCATGCCTCCTTGGCTACCATGATGTGCGCTCTCGGATGGACCTCAAGACAACAATGCGATAGTCCTTTTTGGCTCAAGGCTTGTGGACATCAGATGTTGCTATGAAAAGCGGTACAAGGATTTTCACCTTTGTTGTTATGCCTAAGAACATTATAATGATGCTTGGCACTATGAAACATGGTGATGAATCATTTCACTCTTATATCATCAGATTTCTACTAGAGGACTGGTCATGAGCTTTTTTGTTTAAAGTTTTAATTGAATGGGTGCTGCTAGATGTAGAAAGCTACATTGGAGCAGCATACAGGAGCGTTTTCAAACCAGATTTTTTTTAAAAAGAGAACATTTATTTTGATATAAAAAGCGAATAGCGTTGATAAATATAAATCTCTCTCTATATAAAATTATTCTACATTTTTATTTAAAAAA

Function

symbol description
fgfr4 Predicted to enable ATP binding activity; fibroblast growth factor binding activity; and fibroblast growth factor-activated receptor activity. Acts upstream of or within regulation of hematopoietic stem cell differentiation. Predicted to be located in endoplasmic reticulum; endosome; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; cardiovascular system; digestive system; head; and head mesenchyme. Orthologous to human FGFR4 (fibroblast growth factor receptor 4).

NR:

description
Fgfr4 protein

GO:

id name namespace
GO:0008284 positive regulation of cell population proliferation biological_process

KEGG:

id description
K05095 FGFR4, CD334; fibroblast growth factor receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000040_06250932_06258667.mRNA True 3899 mRNA 0.44 20 6250565 6259445

Neighbor

gene id symbol gene type direction distance location
CI01000040_06187028_06199992 NA coding downstream 50573 6186675 ~ 6199992 (-)
CI01000040_06159849_06174033 NA coding downstream 76532 6159560 ~ 6174033 (-)
CI01000040_06149714_06150666 NA coding downstream 99501 6149315 ~ 6151064 (-)
CI01000040_06134860_06137499 NA coding downstream 112915 6134375 ~ 6137650 (-)
CI01000040_06066026_06096365 DBN1 coding downstream 154200 6065934 ~ 6096365 (-)
CI01000040_06364842_06368728 RAB24 coding upstream 105203 6364648 ~ 6370061 (-)
CI01000040_06423141_06425495 RBMX2 coding upstream 163515 6422853 ~ 6425495 (-)
CI01000040_06430248_06431402 NA coding upstream 170715 6430160 ~ 6432320 (-)
CI01000040_06493709_06497062 NA coding upstream 234142 6493587 ~ 6497279 (-)
CI01000040_06610496_06611957 NA coding upstream 351027 6610472 ~ 6612605 (-)
G187898 NA non-coding downstream 28259 6222079 ~ 6222306 (-)
G187873 NA non-coding downstream 203914 6046401 ~ 6046651 (-)
G187869 NA non-coding downstream 208188 6042110 ~ 6042377 (-)
G187867 NA non-coding downstream 210177 6040081 ~ 6040388 (-)
G187865 NA non-coding downstream 212806 6037547 ~ 6037759 (-)
G187918 NA non-coding upstream 12459 6271904 ~ 6272134 (-)
G187955 NA non-coding upstream 20480 6279925 ~ 6280173 (-)
G187981 NA non-coding upstream 49872 6309317 ~ 6309537 (-)
G187982 NA non-coding upstream 50290 6309735 ~ 6309943 (-)
G188010 NA non-coding upstream 83387 6342832 ~ 6343948 (-)
G187348 NA other downstream 685012 5562655 ~ 5565553 (-)
G187207 NA other downstream 963647 5264193 ~ 5286918 (-)
G185681 NA other downstream 2905685 3344475 ~ 3344880 (-)
G185593 NA other downstream 3257882 2992188 ~ 2992683 (-)
CI01000040_02595281_02596387 FGF1B other downstream 3654141 2594895 ~ 2596728 (-)
G188009 NA other upstream 82082 6341527 ~ 6342701 (-)
G188226 NA other upstream 443756 6703201 ~ 6783675 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011525 fgfr4,LOC106568015 coding CM030133.1 CM030133.1 29118842 ~ 29139529 (+)