CI01000046_03095399_03129278 (GNA12, GNA12A)


Basic Information

Item Value
gene id CI01000046_03095399_03129278
gene name GNA12, GNA12A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000046
NCBI id null
chromosome length 7063170
location 3094953 ~ 3129652 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000046_03095399_03129278.mRNA
AGCTAAATAATATTTCCTTACAACATTTACCGCTTGATACTTTTTTTTTTTCATTACCACGGACAACGGATTTGTTTAGTAAGCAGCTGCCTTTTTTCATAGTTTCAACGGACAGCAGCGGTCACTTTGCTGGGGAAGAACTTAAGTGTGAACCGCTTTCCTTCACAAATGTCTTTATAATGGAGGAATATGCTTACTGTGTTTCAGCCTTTTCCATTTAATGTTTGTTTTAACCGTTGAATATTCGCAGATAGATGTTTGCCGGCGCCAGCTGAGTCTATTCCATGTAGATTTTGTACAAAACATAAAGTCAAGTTCTCTGGCACTTTAATGAATACATCAGGTGGTAACTAACCGTGTCGAAGTTGGAAAGGATGGCTGGCGTGGTACGCACCCTGAGCCGGTGTCTGCTGCCCGCTGAGGCCGCTCACGATGACAGGAGCAACGGGAAAGAACGAGCCCGCGAGCGCGATGTGAACCAGGAGCGCGAGGCGAAGCGGCGCAGTCGCGAGATAGATGCCATGATCGCGCGCGAGAGGCGCTCGGTACGGCGTCTGGTGAAGATCCTGCTGCTAGGCGCCGGAGAAAGCGGCAAATCCACATTCCTCAAACAAATGAGGATCATCCACGGAAAAGAGTTTGACCAGAAAGCGCTGCTCGACTTCAGGGACACGATCTTTGAGAATGTCATCAAGTTTGGTCAAAAGCAGTGCTGCCAGATCAGAGGTCTGGCTCAGTGGAAGAGTTTTGCTTTGTATGGAAAAGGTTATGTTTCTCAGGACGTCTGTGCAGAGGTCCACATGTTCCATCTCCATGATTCTTGTCCACCAAACACTCATGCATCCTTCCCAAAGCCAGTGAAATGTTCTTATCCACTTTACACTGGCAAAAGTCCAGGAGATAGTCCTCTCAACTACTTCCAGATCCTTCCATTATTCCCTTCTGACTTTAAAATCTCATGGAAAAGTCTGTGGCTTTTTGCTGAACACTTAAAAAACAAGATGCCATTCAAAACAAACACAAAAGGCTTGTTTTCAGGAGGCATTCAAGAAACACTAGGAGACATGCTCACGGCGAGATTCCTCGTACATGCGGACAGACTAAGAGTCTCTGTTGCCTTTACGCCCAGCCCAATGACCTGTCGTGCTGGAATGGCATTAAACGGACTTGTCCAGAGCACAGCGAGAGGACTAGGACCTCCTTCTGGGACTCTGAACATCAGGATGTTATTCCAGTGCAACAAAAGGAGGGTGAAATGTGCTGCAAAGCAGGATTTTGCCTCGGTTGACAGTATTGCATTTATTATCAGCCCAACCTTCCTGGTTACTGCCAGAGGCTCAGTTCAGGGGTTTGTGTATTCAGTGTTATGCTTGGAACAAGGGATGCGAGTATTGGTAGATGCCCGAGATAAACTTGGTGTTTCCTGGCAGAACTCAGAGAACGAGAAGCATGGCATGTTTGTGATGTCCTTCGAGAACAAAGCAGGCATGCCCGTCGAACCCTGCACCTTTCAGCTATACGTCCCCGCCCTGCAGGCACTCTGGAATGACAGCGGCATCCAGGAAGCCTACGGCCGACGGAGTGAGTTTCAGCTGATCTGCTGTTTATTTGAAGAGGACTGGGGCAGAATTGTAGCAACTGAGATCACCGCTGGGAAAGGAGGGGTTAAGGCCTCTGAACATGGCCATGCTCAATCATGCTTCCCCTTACTCACTGCACAAATACCCATGGGCACACTTTCCTACATTAGTGAATCAGTGAAATATTTCCTGGACAACTTGGATCGGATTGGCCAACTGAATTATGTGCCAAGCCGACAGGACATCCTATTGGCCAGGAAGGCCACCAAGGGAATTGTGGAGCATGATTTTATCATCAAGAAGATCCCTTTTAAGATGGTAGATGTGGGTGGCCAGCGCTCTCAGAGACAGAAATGGTTTCAGTGCTTTGATGGCATCACCTCCATCCTCTTCATGGTGTCCTCGAGCGAGTTTGACCAGGTATTGATGGAAGACCGCCGCACTAACCGCTTGGTGGAGTCCATGAACATCTTTGAGACCATAGTCAACAACAAGCTCTTTTCCAATGTGTCCATAATCCTCTTCCTCAACAAGATGGACCTTCTGGTGGAGAAGGTACGCAAAGTCAGCATTTGCAAGCACTTTTCTGACTTCCGGGGAGACCCTCATCGAGTGGAGGACGTGCAGGCCTATCTCGTTCAATGCTTCAACCGCAAACGTCGCAACCGCAGCAAGCCGCTCTTCCACCACTTTACCACTGCCATTGACACTGAGAACATTCGCTTTGTCTTTCATGCCGTCAAAGACACGATTCTTCAGGAGAACCTTAAGGACATAATGTTGCAGTGACTTTTACAGTAGTTTGATCTGTTTTTTGCCATTGTTTGAGTCCATTTTCCATCCTGTTGCAGGAGAAAATGCCACCTGGACTTCATTTGAACGTTTTAACCTTGACAACTGTGCAGGAAAAAAAATCATGGTGCAAAATTTGCATCTTGTGTTAGATGATCATGTACTCCGTTATGCAGACCTTTATATTAGAGACATGATATTCAAACTCTCTCTGTCATCACTCATTTTAATTTCCTCCTGTGAAACGGGAAGTTTGAAAACACCTTGAATGGTGGAAAAACCAAGAACATTTGAGGGTGTTACAGTTTGTCAATGCAAAGAAAATGAAGCAGTTTGGTAGTCGATTGTTTTTTGTATTTTCACCTCTTTTCTCAAGGATACACTCAAACAATGCACAATAACTTTACACTGGCCCATCTCCCAAATAACATCCTAAAAATAAA

Function

symbol description
gna12a Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Acts upstream of or within several processes, including gastrulation; glial cell development; and negative regulation of cell-cell adhesion mediated by cadherin. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in brush border membrane. Is expressed in brain; gill; head; and olfactory epithelium. Orthologous to human GNA12 (G protein subunit alpha 12).
gna12 Predicted to enable D5 dopamine receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in regulation of TOR signaling and regulation of proteasomal ubiquitin-dependent protein catabolic process. Located in focal adhesion.

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process

KEGG:

id description
K04346 GNA12; guanine nucleotide-binding protein subunit alpha-12

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000046_03095399_03129278.mRNA True 2815 mRNA 0.46 11 3094953 3129652

Neighbor

gene id symbol gene type direction distance location
CI01000046_03080433_03083966 EIF3B, EIF3BA coding downstream 10661 3080433 ~ 3084292 (-)
CI01000046_03067420_03068783 CHST12A, CHST12 coding downstream 26170 3067367 ~ 3068783 (-)
CI01000046_02972183_02978771 LFNG coding downstream 116182 2972183 ~ 2978771 (-)
CI01000046_02873360_02887683 SNX8A, SNX8 coding downstream 207270 2872981 ~ 2887683 (-)
CI01000046_02866255_02867695 MRM2, FTSJ2 coding downstream 227258 2866070 ~ 2867794 (-)
CI01000046_03140684_03161621 CARD11 coding upstream 10730 3140382 ~ 3161621 (-)
CI01000046_03606941_03615212 MMD2, MMD2A coding upstream 477065 3606717 ~ 3615212 (-)
CI01000046_03635227_03641081 ARPC1B, ARPC1B.S, ARC1B, ARPC1B.L coding upstream 505328 3634980 ~ 3641081 (-)
CI01000046_03643306_03647935 ARPC1A coding upstream 512530 3642182 ~ 3647935 (-)
CI01000046_03761959_03768003 FSCN1, FSCN1A coding upstream 630799 3760451 ~ 3768116 (-)
G198020 NA non-coding downstream 37007 3057730 ~ 3057946 (-)
G198014 NA non-coding downstream 45113 3049620 ~ 3049840 (-)
G198013 NA non-coding downstream 45434 3049101 ~ 3049519 (-)
G198012 NA non-coding downstream 46528 3048179 ~ 3048425 (-)
G198002 NA non-coding downstream 78124 3016460 ~ 3016829 (-)
G198044 NA non-coding upstream 52433 3182085 ~ 3211294 (-)
G198190 NA non-coding upstream 268317 3397969 ~ 3398865 (-)
G198264 NA non-coding upstream 413648 3543300 ~ 3543526 (-)
G198281 NA non-coding upstream 421847 3551499 ~ 3552690 (-)
G198307 NA non-coding upstream 423108 3552760 ~ 3554252 (-)
G196463 NA other downstream 926309 2168266 ~ 2168644 (-)
CI01000046_00777923_00780186 RPC11, POLR3K, POLR3K.S other downstream 2314660 774434 ~ 780293 (-)
G195098 NA other downstream 2418825 670736 ~ 676128 (-)
G195097 NA other downstream 2668627 407423 ~ 426326 (-)
G198265 NA other upstream 627971 3665243 ~ 3800101 (-)
G199054 NA other upstream 2967707 6097359 ~ 6097674 (-)
G199014 NA other upstream 3234526 6364178 ~ 6375406 (-)
G199130 NA other upstream 3448328 6577980 ~ 6594210 (-)
G199181 NA other upstream 3697033 6826685 ~ 6830453 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025632 gna12a coding NC_007114.7 CM002887.2 41647637 ~ 41706238 (+)
grasscarp (Ctenopharyngodon idella) G27176 NA non-coding CI01000004 null 4585555 ~ 4589326 (+)
eurasian perch (Perca fluviatilis) G22567 LOC108267897 non-coding NC_053113.1 CM020910.1 38854485 ~ 38854718 (+)
bowfin (Amia calva) AMCG00018043 gna12,gna12a,LOC107758336,LOC107703403,LOC107674729 coding CM030135.1 CM030135.1 465505 ~ 467994 (+)
tiger barb (Puntius tetrazona) G20624 gna12,LOC107703403,LOC107758336,LOC107753491,LOC107592501,LOC107674729 non-coding NC_056701.1 CM032070.1 16205369 ~ 16207819 (-)