CI01000047_02747442_02755248 (DLX3B)


Basic Information

Item Value
gene id CI01000047_02747442_02755248
gene name DLX3B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 2746901 ~ 2755248 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_02747442_02755248.mRNA
GTCAGCGGCTGATAAAGGTTATTTGGGTGCAAGAGGGATGAGTGGACCGACATATGACAGGAAGATACCCGGTATTTCAACCGATCTTTCGGGCTCTATGAGTTGCCATCCGACTTCTAAGGACTCTCCGACTCTTCCAGAGTCATCGGCTACAGATATGGGTTATTACAGCAGCCATCACGAATACTACCAGAGTCCTCCATACCCTCAACAGATGAATTCATATCACCAGTTTAATCTGTCTGGGATGGGGGCATCAGCCGGACCTTACCCCACCAAGACAGAATACCCTTACAGCAATACTTACAGACAATACGGACATTACAACAGAGACCTGCAGACGCCACCGCAAAGCGCAGTCAAAGAGGAACCAGAGACTGAAGTTCGGATGGTAAACGGAAAACCCAAGAAAATCCGCAAGCCGCGCACCATTTACTCGAGTTACCAGCTCGCCGCACTGCAGCGCCGCTTCCAGAAGGCGCAGTATCTAGCGCTGCCGGAGCGAGCTGAACTCGCCGCACAGCTGGGGCTCACACAGACACAGGTCAAAATCTGGTTCCAGAACCGGAGATCCAAGTTCAAGAAACTTTACAAGAACGGCGAGGTTCCGCTGGAGCACAGCCCGAACGCCAGCGACTCCATGGCCTGCAACTCCCCTCCATCGCCGGCTGTTTGGGACAATAGCGCGCACTCTAGCCAGGTATCTGCTATAGGTTGGTGTGTTTATGGTGGTTTGGAGTTTACCAGCATCAGATGTTTTCTGGAAGAATTTAATTCCTGCTATGATCTAGATGGCGTCGTCTTGGGACACATTGCTCACTCAGAGAAACCCAAAAGCTGGAAACCGGGGACGATTTCGGGAACCGCTTTCCTCCTTGTCCTTCGAATCTCCTCCAGGCCTCTAAATCCATTCCGAATTGCACCGAAGATGCGTTTCGATGCGCCACAATTAAAACTCATCAGGCACCTCCAGTGCTGGAAATCTCTTAAACTACTATCAGTCCATCTCATCCCCTTGTACTCCCATCACCCTTTAGTGCTCTCCCAAATCAGCTTCCCACGTAATTGCCCTGTTTGAAAGCCCCTTTTCTCTGCTTGTCCGACTTGAGCACCCATTATTCTAATCTCGAGATGTAAAATTGCCCATAATTTCCCTTGTGAGAGCTTGCTACTTCATTCAAAAACACTTGTCTTCTCTTCCCATGACTGTCATCTGAACGGAGCAACATAAACTCCACAAATCAAACTCAGGGATGGGAGTATATAAAGAGGAGCTGGCTAAAATCATTCCATACTTTTGGAATATTAAGTGCAGAGAGATGGCTTCCATTTACAGAAGTGTGGTGGATTTTTCAGCGTGGTTTGTTACCTGTCGAGAGAAGGTAAGTGAATTTGCGCTGTGTTGCTGAGATGAGCATGGTTTAGTATGTAAATAAGTAAGAAAATAACTGATTGTGGGACTCGTCGCATGTAAATCTCCCCCAGATGTTGCAGAAGCTCATAAATGCCTATTATTGTACTTGATATTAGAGTTTCATGCAGGAAGAATTTTGTCTTTATTGTTTACTTGCATGAGGGGTGCATGTGGCAGGCATTGTTTTAATACTGACTATAATAAA

Function

symbol description
dlx3b Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including sensory organ development; skeletal system development; and trigeminal nerve development. Predicted to be located in nucleus. Is expressed in several structures, including ectoderm; neural plate; neurogenic field; pharyngeal arch; and presumptive structure. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 4 and trichodontoosseous syndrome. Orthologous to human DLX3 (distal-less homeobox 3).

NR:

description
distal-less homeobox 3b, partial

GO:

id name namespace
GO:0048666 neuron development biological_process

KEGG:

id description
K09315 DLX3; homeobox protein DLX3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_02747442_02755248.mRNA True 1619 mRNA 0.47 7 2746901 2755248

Neighbor

gene id symbol gene type direction distance location
CI01000047_02615438_02617123 NA coding downstream 129629 2615270 ~ 2617272 (-)
CI01000047_02594920_02598778 NA coding downstream 147947 2594920 ~ 2598954 (-)
CI01000047_02575122_02577946 G6PCA.2, G6PC coding downstream 168907 2574405 ~ 2577994 (-)
CI01000047_02524134_02533163 SGMS1 coding downstream 213550 2524114 ~ 2533351 (-)
CI01000047_02507950_02519956 ASAH2 coding downstream 226702 2507608 ~ 2520199 (-)
CI01000047_02826142_02826444 NA coding upstream 70495 2825743 ~ 2826444 (-)
CI01000047_02829408_02858055 ACE coding upstream 73208 2828456 ~ 2858562 (-)
CI01000047_02939538_02940848 DRD6B coding upstream 184245 2939493 ~ 2942418 (-)
CI01000047_03002349_03064708 PLCE1 coding upstream 247101 3002349 ~ 3065687 (-)
CI01000047_03080182_03082134 SLC35G1 coding upstream 324838 3080086 ~ 3082134 (-)
G201110 NA non-coding downstream 27393 2719269 ~ 2719508 (-)
G201065 NA non-coding downstream 127032 2619622 ~ 2619869 (-)
G201050 NA non-coding downstream 260659 2486012 ~ 2486242 (-)
G201037 NA non-coding downstream 306755 2439810 ~ 2440146 (-)
G201034 NA non-coding downstream 378822 2367835 ~ 2368079 (-)
G201124 NA non-coding upstream 2218 2757466 ~ 2757902 (-)
G202683 NA non-coding upstream 2850 2758098 ~ 2758353 (-)
G202719 NA non-coding upstream 112529 2867777 ~ 2868033 (-)
G202725 NA non-coding upstream 119945 2875193 ~ 2875581 (-)
G202731 NA non-coding upstream 124049 2879297 ~ 2879687 (-)
CI01000047_01708628_01744282 BICC1B, BICC1 other downstream 1031384 1706068 ~ 1744282 (-)
G200472 NA other downstream 1912430 833941 ~ 834471 (-)
CI01000047_00519408_00522108 PYYB other downstream 2224659 519108 ~ 522245 (-)
G200299 NA other downstream 2478866 267530 ~ 268035 (-)
G202733 NA other upstream 377065 3132313 ~ 3133652 (-)
G202944 NA other upstream 1042555 3985342 ~ 3986402 (-)
CI01000047_04213574_04213976 NA other upstream 1458161 4213409 ~ 4214085 (-)
CI01000047_04285605_04286644 COA3A other upstream 1523660 4285227 ~ 4286694 (-)
CI01000047_04575184_04576337 GNGT2B, GNGT2 other upstream 1819087 4574335 ~ 4576342 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004505 dlx3b coding NC_007123.7 CM002896.2 5708400 ~ 5711920 (+)
bowfin (Amia calva) AMCG00016736 dlx3,dlx3b coding CM030122.1 CM030122.1 28949450 ~ 28953796 (-)