CI01000047_04222867_04253291


Basic Information

Item Value
gene id CI01000047_04222867_04253291
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000047
NCBI id null
chromosome length 7523058
location 4222682 ~ 4253711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000047_04222867_04253291.mRNA
CTATATAAAGAAATACATGTCTTATGTTGTTATTATTATAGCTTAATTTGCTGTTATATTTGTCATTTTCACGTAAAAGTGGAGAAGAAGACGGCACCTAATGTTCTTGATGCTTTGCGTTTAATGCGCGCGCTTGTTTATTTCTCTTTTTCATCCAGTTGGTGATGCTTTGAGGAGTCTTTATCATGTCTCATGCCGAAGTTGAGTTCGCTGGACGTGGTTTTCCAGGTTTACCTGTTGAATTAGAGGAGGACTGTCTCTCCAGAGTGCCAATGCTGCGAACGCACTCCTTGAGCGCGAGGAGGAACTCATACGTGCTTCATAAACTCAGTGTGGATATAGATCCGCAAATATACACGGAGACACTCTCCAAGGCGCTGTCATGGTCTTCTGAAAACATATTACTCTCAGAGAGAAGAACTGTGGAGGATAAAACTGACCCTCCATCTCCAAGTTCTTCATCCGCGGTCTCCAGTCCAGAGTCTTCTACACCCAACGCCAATTCAGCAGCTCCAGAGGACTGGAGAAGCTCCGTCCAGACGCCTCTGTCCCCTGCTCAGGATGCCAGCTCAGATTCGGACAATGAGGGGTCCAAGGTCGAGCATGTGGTACCACGACGCCCATTTGTAAGCAGACTGGAACAGGACGAGAAAGAGGAAATCGAGACCAAAGCGGTGGCCACCTCACCAGATGGAAGGTACCTGAAGTTCAACATTGAAATTGGGAGAGGGTCGTTCAAGACGGTCTACAAGGGACTGGACACAGAGACCACGGTGGAAGTGGCATGGTGCGAGTTACAGGCGTGGAACAAGGCTGAGTTGGCAAAGTTTTTCAGAAGTGCAAACACAGGGATTAAATGTGCACGTGAGGTGGATTCTTTGCACCTGTTGCTCTCTAGCATCATGTTGTCCTGTGATGATGGGGGTTTCTCAGGGGAAAGTGAGGCCAGGATTACGGCCCTGGGATTGATGGAACAGACTCGCAAACTGACCAAAGTGGAGCGGCAGCGCTTCAGTGAAGAGGTTGAAATGCTCAAGGGTCTTCAGCACCCGAACATTGTGCGCTTTTATGACTCCTGGAAGTCCACTGTGAAAGGTCACAAGTGCATCCTGCTGGTCACTGAGCTCATGACTTCTGGCACTCTCAAAACGGACTTGAAGTGTGACAATATCTTCATCACAGGGCCCACAGGAAGTGTGAAGATCGGGGACCTTGGACTGGCCACACTCAAGAGGGCAAGTTTTGCAAAGAGCGTAATAGGAACTCCAGAGTTCATGGCTCCAGAAATGTATGAGGAGAAGTACGACGAGGCGGTGGACGTCTACGCATTTGGCATGTGCATCTTGGAGATGACCACATCAGAATACCCATATTCAGAGTGCCAAAATGCTGCCCAGATTTACCGCAAAGTTACCAGTGGTATAAAGCCAGACAGTTTCTACAAGGTGAAAGTTCCAGAGTTGAAGGAAATCATTGAAGGCTGTATCCGCATGAACAAAGATGAAAGGTACACGATCCAAGACCTGCTGGAGCACACTTTCTTCCAGGAGCACAATGGCGTTCACGTCGAGTTGGCTGAAGAAGATGATATGATCAAATCCAGCCTGAAGCTCTGGCTTCGCATGGACGACACCAAGAAGCTCCACGGAAAGTACAAGGACAACAACGCCATTGAGTTCCTGTTTGAGCTTTACAAAGATGTGCCAGAGGAGGTGGCGCAGGAGATGAGATCTGCAACAATGGTCCTGAAGCTTTGATATTCACAGAGCTATTAAGGAAATTTTTGGAAAATTTAAGGAAACTTTAGTAATAACAGTAAATTATGCATAATTACATGCAACTAACCCTAAACCAAACCCTACTCCTAACCCTATAGCAAGTACATGTTGTTATAACTATATTACTCAGTATTTTATGCTTTGTATAATTACACTGTAACAATGACACCTTAAAATAAAGTGTAACTGAACTATATTATTTTAGTAGTTTTTTAGGTAACTATTTGAAAATAAAAATTCAGTATTAAATAAATAAATCTAAATAATTACATAAATTAAATCATAGTTTCATAATAAAGTAATAATCCATTGAAACAGCATATAGCCTTCAAATATTGTTCAGTTACATAAACATTGCAATGTTGATTAAAATGATCAAATGAAAAGTTAGTAGAAAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000047_04222867_04253291.mRNA True 2177 mRNA 0.44 8 4222682 4253711

Neighbor

gene id symbol gene type direction distance location
CI01000047_04214987_04217836 VPS25 coding upstream 4205 4214987 ~ 4218477 (+)
CI01000047_04198702_04207295 FAM57B, FAM57BB coding upstream 15277 4198702 ~ 4207405 (+)
CI01000047_04183386_04192887 MAZ coding upstream 29656 4183386 ~ 4193026 (+)
CI01000047_04153298_04179343 TAOK2A, TAOK2, TAOK2B coding upstream 41816 4153298 ~ 4182449 (+)
CI01000047_04120765_04127370 NA coding upstream 95049 4120765 ~ 4127633 (+)
CI01000047_04471595_04476690 SGCA coding downstream 217414 4471125 ~ 4477217 (+)
CI01000047_04582184_04586359 TMEM101 coding downstream 328293 4582004 ~ 4586796 (+)
CI01000047_04606043_04610846 G6PC3 coding downstream 352332 4606043 ~ 4611322 (+)
CI01000047_04663268_04663847 NA coding downstream 408604 4662315 ~ 4663996 (+)
CI01000047_04678392_04690824 NA coding downstream 424281 4677992 ~ 4691097 (+)
G201526 NA non-coding upstream 157860 4063009 ~ 4064822 (+)
G201520 NA non-coding upstream 225326 3996459 ~ 3997356 (+)
G201509 NA non-coding upstream 290784 3907608 ~ 3931898 (+)
G201508 NA non-coding upstream 291000 3907414 ~ 3931682 (+)
G201555 NA non-coding downstream 33068 4286779 ~ 4349774 (+)
G201581 NA non-coding downstream 48863 4302574 ~ 4305252 (+)
G201609 NA non-coding downstream 154807 4408518 ~ 4408772 (+)
G201613 NA non-coding downstream 166473 4420184 ~ 4425415 (+)
G201599 NA non-coding downstream 224640 4415813 ~ 4482457 (+)
G201387 NA other upstream 520822 3696516 ~ 3701860 (+)
G201186 NA other upstream 1134495 3018705 ~ 3088187 (+)
G200076 NA other upstream 1644685 2520596 ~ 2577997 (+)
G200003 NA other upstream 1903720 2316863 ~ 2318962 (+)
CI01000047_01749606_01752688 NA other upstream 2469845 1749606 ~ 1752688 (+)
G202382 NA other downstream 2562006 6815717 ~ 6816118 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005088 CABZ01069040.1 coding NC_007123.7 CM002896.2 3652015 ~ 3705862 (-)