CI01000049_08336944_08342116


Basic Information

Item Value
gene id CI01000049_08336944_08342116
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 8336944 ~ 8342141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000049_08336944_08342116.mRNA
ATGACTGTTGTACCTACATCAGGGGGTATTGCAGTCGCTCCCAAAGTATCTCCGATAATGGAGGTGGATTCAGAGGAGGACGATGAAGACCCAGTTCCAGCTCCAAGTGCAGGACGTATATTTAACATCAACAACAGCAACAACAATGAGGAGCCCAAGGAGGTGTTTGTGATTAACCCAGCGGGACTCCTGTATTATCAATGGCTGCTTATAATCACAATTCCCGTCATGTACAATTGGACAGTTATAATTGCAAGAGCCTGCTTTGAGGAACTGCAGCATGAGTATCTACTGATATGGTTCCTCCTGGACTACACCTCCGATTTGCTTTATTTGGCTGACATGGCCTTCAGATCACGAACAGGGTACCTGGAACAAGGCTTGCTTATCAAAGATGAAAAGCTCCTTCGCCAGCGGTACACCAGCAGTCTCCAGTTCCGCATCGATGTCATCTCCATGCTACCCACGGATATCTTCTACTTCGTTTTAGGGTTAGACTACCCAGAGATCCGCATAAACAAGTTGCTCCGCCTGAACCGCATGTTTGAGTTCTTCACCATCTCAGAAACCATGACCAACTACCCCAACATCTTCCGAATCTGCACTTTGGTCATGTACATCATCATCATCATCCACTGGAACGCATGCCTCTACTTCTCCTTCTCCAAGTTAATTGGGTTCGGATCAGATGCATGGGTGTACCCTGCTCTCACCGAACCAGAGTTCGGAGAGCTGATGCGAAAATATTCCTTCAGCCTCTACTGGTCTACGCTCACCCTCACTACTATCGGAGAGACGCCATCTCCGGAGCTAGACTCTGAATTCCTCTTCCACGTAGTTGACTTCCTGGTGGGCGTATTGATCTTTGCCACCATTGTAGGTAACATTGCTACAATGATCTCAAATATGAACGCAGCCCAGGCTCAGTTCCAGGCCAGGATCGACAACATTAAGCAGTACATGCATGCGCGACATGTCAGCAAGGACCTTGAGAAGCGTGTCATCAAGTGGTTTGACTACCTGTGGACTAACAAGAAGGCACAAGATGAAAGAGAGGTGCTGAGGTACTTGCCAGACAAATTACGGGCAGAGTTAGGCATGAACGTGCATTTAGAGACCCTCATGAAGGTGCGGATCTTTGCCGACTGTGAGGCAGGGTTGCTGATCGAGTTAGTGTTGAAGCTTCGCCCTGTAGTCTTCAGTCCCGATGACTACATCTGCCGCAAGGGTGATATCGGGCGGGAGATGTACATCATAAAGGAAGGCAAACTTGCTGTGGTGGCCGATGATGGCATCACTCAGTTTGTCGTCCTTGGCGATGGAAGCTACTTTGGTGAAATTAGCATTCTAAACATCAAGGGCAGCAAGGCTGGGAACCGCAGGACAGCAAATATTAAAAGCATAGGGTACTCAGACCTCTTCTGCTTGTCCAAAGATGATCTGATGGAAGCTCTGACGGAATATCCCGATGCTAAAGCTATGCTGGAAGAGAAAGGGAGACAGATTCTGCTGAAGGATGGTCTGCTGGAGCTGGACCCTGCGAAACTAAAGCCAGACGAGAGAGACTTGGAGGACCGCGTAAACCGAATATACAGCACAATGCAGTTGATGCAGACCAAGGTAAACAAGCTGCTGGCGGAACAGGAGGAGACACAGAAGAATATCAAACGTCGAATTGCTCAGATAGAGCGTCTGGCTGGGGAAGTGTCCCACCTGTTCTCTTTGCCAGCATTTGCTGTCACATGTGGACACTTATTGTATTTGCTCAGAGAGGTGATGAGAAAAAGGAAGTAAGCTGGAAAAAAAAAAAAAAAAGGAA

Function

NR:

description
cyclic nucleotide-gated channel alpha rod

GO:

id name namespace
GO:0030553 cGMP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000049_08336944_08342116.mRNA True 1819 mRNA 0.48 5 8336944 8342141

Neighbor

gene id symbol gene type direction distance location
CI01000049_08332719_08335569 NA coding upstream 1149 8332535 ~ 8335795 (+)
CI01000049_08326623_08329601 NA coding upstream 7045 8326285 ~ 8329915 (+)
CI01000049_08324408_08325532 NA coding upstream 11391 8324071 ~ 8325553 (+)
CI01000049_08319289_08322822 NA coding upstream 13703 8319289 ~ 8323241 (+)
CI01000049_08297598_08299926 NA coding upstream 36951 8297306 ~ 8299993 (+)
CI01000049_08357834_08391102 NA coding downstream 15558 8357699 ~ 8394596 (+)
CI01000049_08426993_08448781 NA coding downstream 84852 8426993 ~ 8449074 (+)
CI01000049_08454444_08471856 SUCLG1 coding downstream 112201 8454342 ~ 8471856 (+)
CI01000049_08707784_08716438 NA coding downstream 363860 8706001 ~ 8716635 (+)
CI01000049_08918472_08920408 LRRTM1 coding downstream 576213 8918354 ~ 8920583 (+)
G210270 NA non-coding upstream 103991 8232719 ~ 8232953 (+)
G210241 NA non-coding upstream 105003 8231251 ~ 8231941 (+)
G210262 NA non-coding upstream 181884 8154659 ~ 8155060 (+)
G210228 NA non-coding upstream 268847 8067658 ~ 8068097 (+)
G210227 NA non-coding upstream 269532 8067038 ~ 8067412 (+)
G210369 NA non-coding downstream 318839 8660980 ~ 8661202 (+)
G210545 NA non-coding downstream 676526 9018667 ~ 9018976 (+)
G210424 NA non-coding downstream 774906 9117047 ~ 9261427 (+)
G210625 NA non-coding downstream 856968 9199109 ~ 9228087 (+)
G210091 NA other upstream 458088 7873750 ~ 7878856 (+)
CI01000049_07219171_07224229 NA other upstream 1039882 7218811 ~ 7224268 (+)
G209660 NA other upstream 1454914 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 3860674 4473662 ~ 4476270 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001421 cnga1a coding NC_007112.7 CM002885.2 43894238 ~ 43899422 (-)