G211660


Basic Information

Item Value
gene id G211660
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000049
NCBI id null
chromosome length 9665442
location 9303388 ~ 9303601 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU240116
AAAAAATTAGGGCAGGACTTGATCGTTGAATCTGTGTCGTTTGCTATTGATGTGATATCATGTTAATGACAGGCTATCCCAAAAAAAAAAAAGAAAAGAAAAAGGTAAACCTCACCAGAAGCCCTCAGATGCATGTGTCTCTGAAGAATACAGACTTTCTATTGATTCTGCTGGTGTCCTGAACTCTAAATACACTGTACCCAAAACAAAACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU240116 True 214 lncRNA 0.37 1 9303388 9303601

Neighbor

gene id symbol gene type direction distance location
CI01000049_08933819_08935755 LRRTM1 coding upstream 367458 8933701 ~ 8935930 (+)
CI01000049_08918472_08920408 LRRTM1 coding upstream 382805 8918354 ~ 8920583 (+)
CI01000049_08707784_08716438 NA coding upstream 586753 8706001 ~ 8716635 (+)
CI01000049_08454444_08471856 SUCLG1 coding upstream 831532 8454342 ~ 8471856 (+)
CI01000049_08426993_08448781 NA coding upstream 854314 8426993 ~ 8449074 (+)
CI01000049_09421372_09430717 ADRA1D coding downstream 117618 9421219 ~ 9431606 (+)
CI01000049_09532855_09551543 RNF24 coding downstream 229254 9532855 ~ 9554478 (+)
G210677 NA non-coding upstream 18604 9284566 ~ 9284784 (+)
G210676 NA non-coding upstream 20705 9282365 ~ 9282683 (+)
G210674 NA non-coding upstream 23093 9280047 ~ 9280295 (+)
G210666 NA non-coding upstream 39100 9264049 ~ 9264288 (+)
G210424 NA non-coding upstream 41961 9117047 ~ 9261427 (+)
G211663 NA non-coding downstream 1863 9305464 ~ 9305672 (+)
G211669 NA non-coding downstream 5060 9308661 ~ 9308867 (+)
G211706 NA non-coding downstream 41312 9344913 ~ 9345141 (+)
G211799 NA non-coding downstream 178522 9482123 ~ 9482544 (+)
G211803 NA non-coding downstream 206071 9509672 ~ 9509911 (+)
CI01000049_08326623_08329601 NA other upstream 973473 8326285 ~ 8329915 (+)
G210091 NA other upstream 1424532 7873750 ~ 7878856 (+)
CI01000049_07219171_07224229 NA other upstream 2006326 7218811 ~ 7224268 (+)
G209660 NA other upstream 2421358 6878133 ~ 6882030 (+)
CI01000049_04473766_04475768 GM10043, LSM6, SNRPF, BRAFLDRAFT_125735 other upstream 4827118 4473662 ~ 4476270 (+)

Expression


Co-expression Network