XLOC_009723 (si:ch73-22o12.1)


Basic Information

Item Value
gene id XLOC_009723
gene name si:ch73-22o12.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 10557504 ~ 10638020 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019466
CAATGAGCGCAGCCCTTATGATAGAGTTTCAACAGTGCGATCCCAAAGCGACAGGTTTGAGACTCCACCGTCTGCCGAAACATCCAACTCACTTACCGGATATTTCTTCACCTGTAGGACGTTTATTAACCGGCCACCGGACGCCGCGCTACAGTTTCTGAGGACTAAAGCTGTTTACACGATTTAAAGGGGATTTGTTGACGCTAGATTGTAAACCAAATCAAGAGGAACGCGCTGAACACAGCGACTCACCTTTACATCAAGTTTCTCTGCTCGACTACTGAAGGAAACTAAAGGAACTTCATAACAGTATCTCAATCGGACTGTGTCGATTGATTTTTGTTTTGGCGATTCTGTGCTGATTGAGTTCAACAAGCGGACAACCGACAAGGTGGACTGTCCAGCCTTCCCTCCGATGACCATGTCAGGACTGTTAGGCGCTCTCTTTCTCCTTATTGTTCAAGGGTCGTTGGCTCAGCACGTGAGGGTGGAGCCAGAGGTTGTGTCGTTTCCTGGACAGACAGTAACACTGCGCTGCCAGTTTCCAAACCCAGGCGATACCCAGCTCACTCAGGTGTCATGGATCTTTGAACGGACTGACACAGAACGAACCAACATTGCTGTTTTCCATCCAAACTTTGGGGTGAATTACCCAACCACTTCTCCTGTATCAGGGCGTGTCACTTTTGTATCGAACCCGCCCACTTTGGATAACCCATCCATTCAGATCAAAGATGTGAAGATGACAGACGAGGGCCGATATATCTGTGAATATGCAACCTACCCCTCTGGCAATGAACAGGGAGTTTCATCACTAGTTATGCTAGCTAAACCGAAGAACACGGCTACAACTGTCACAGTTTCCGCCGGCAAAACCCCGGTCATCGTGGCGCGCTGTGAATCATCCAATGGCCGTCCGGCAGCGACCATTACTTGGTCCACGGCGCTAAATGGCAACGTGACGACACCAAAGAAGACGGACAATCCGGATAATACGGTCAGCATCCAGAGCGTCTACATGCTGGCTCCGCAGCCTGAGGATAATGGCAAGGACATCAGCTGCATTGTATCGCACCGTACCATGGCCCAGCCTGAGACCTTCCCCATGAAGCTTGTTGTTGAATATCCTCCAGTGGTGCAGATTAAGGGTTACAATAACAACTGGTACAGGGGTCAGACGAGTGCACATTTGACCTGCCATGCTGATGGAAACCCAGTCCCCACCACTGTCACCTGGAAAAcTTTGTCCGGGCATATGCCTGAAACCGTGCAGGTGCGGGAAAACCGGCTCGCCGTGCAGCAGGTGGATGACACCATCAACACCACCTTCATCTGTGAGGTCAAGAACAGTTTGGGATACGGCAGAGATCAGGTCACCGTCGTTGTTCGGGAGCAAGCACCTCCCAACTCGAACGCAGGTGTGATCGTAGGCGTGATCTTCGCGTGTCTTCTGGCCATCTTATTATTAGGTGGACTCGCCTACTGCCTGGTATCCCATAATCGCCGGCAGCAGCACGGTTACCGTGGCACTGGCAAACCGTCTGGCACTCCCTACGATTCCTTTACCCGGCTCTTCGGCTCTGCTAAATCCAGCAAAAATGGCACCGGAAACAACGGAAACAACAACACGCCCATTTACAGAGGAGAGGTGGTGCTTAACGAGAAAACAGCCAATCAGGGCATGCATCCAGGAGGCGTGGCTCTGCTGgagaccacacacactcacacagcagAGGACATCTTGCTTAGCCGAGAGATGGACGAGGTGGAAAGGAAGAAATTCGATGAGCTCGAAGAAGAAGACGAGCGATATGACCATTTCAGTGGGGGCGGACCCATCCTTCAGCTCCGCCCACATGACGATGACATAGACGATGACATGGAGTCACAAAGGGATGGCTCCGTAATCTCTCGGACTGCAGTCTACGTGTAAGAGCAAACCAGAAAGGGGTTTGAGGAGGGCGAACGAGGACCTCTTCCTGAAGGATTACATTTCTTCCTCTTCACGaatattcattttattgtaaAGAAAACAAATTGCGGCCATGAAGGAGGGATTAATGAATGGATTGAGTTAATGAGTGGATGAATTAGTTCGCTGGATATAGCACAGATTAAAACCTTTGAAGGATCAGGTGAAGTTAATAGACACTAAGTACAAACCGTCAGGCTTCCATTCCTAATTATTGCTCATGGCGACACGAGTAATATGAAACTGCATATGTTGACACTGCGTGATATATCtattatattacacacacacacacacacacatgaagtaTGTACATCCACTGTGCTGTAAATGTTTTACCTTCCTCCTTACTTTCTGTTGATATCATGGGTTCAcacttaaattggtttcaaacctGATTTGAATCGAGTTCGAGCACATTCCCCAGCCCTGCATCTCATTTTGGCACATGTTTTGTATTTGTAGACATTTAAAGAGccaaaatgtgctttttttatcTGTTACAAACATAGGCTTAATCAAACATAGTGTCTAAATTTGCCATTCGGTGGACTTCCTTTCTGTTAATTCACTTTCACGCGCCCATCTGTCTTGAGGTGACGTGTACAGATCGCTCATTATACAGCACTCAATTTCTCAATCCTTTGACATGACTCAATGGTGAATCATTTGGTTTCGggctaatcaaatcaaatcatacGTTAATGAATGATGTGTTCGTTCTCACCCACAATTCATTAATTCAGGAAAAAAGGGTTCAAGGCAGCGCTTTCTACCATTTTTCCAGCACAATTTCCTTATGCATTCAGTTATAGACCACTGTAGCAGAGTACTGTAGTGATAAAAGAACTGAGAGTCAGAGTCATATCCTTATTTACATGAACTTTAACCCTGGTGAAAAGAAAGCATCAGTTTATTATATAATGTTCAACTCGCAAAGTGATGGTGTGCCACTTGTAACACATTACATTCGGTTCAATTTAATCAAATTCTTTTTAATtatcatgaattaactttttgtaaattaaattttaaggTGATTAATCTTTGATCATAATACATTCAatgatgttaaagggatagtttgccaaatattatgattattacttaataatttattttccctcatgtggtttaaacctgtatgagtttcttcttgaacacaagagaagatatttactatgaaaaaagataaattactatgggagtcaatgggtaccagctttctacattttccaaaatatcttcttgtgtgtttaTAAACTCAAATAATTGAATGCTCATAATACATTCAATGATGTTAAAGGGATAATTTGccaaatattatgattattacttaATAAtgtattctccctcatgtggtttaaacctgtatgagtttcttcttgaacacaagagaagatatttacTATGAAAGAAGATGAAtaactatgggagtcaatgggtaccagctttctacattttccaaaatatcttcttgtgtgtttaagaaactcaaataggtcaTTTGTTGATGGCagaattaacatttttgtgtgaactattcctttaatttatacatttaaaatgtcagctattattatttatttttttattgttgttcttATTGCAGACAGTTCATGATTCTTACATCTTTAACTCGAATGAAactgttgtaaagtgttaccaacaaacTTTATTTCTAACTTTACCCCACGTCCAGGGTTACCATGGCCACACAGCTAAATATACCTCTCCCTCGACACCGCAGATATGCATCGCATACTGTTATTTccttgtttgttttgctttatcaTCCCTCTCACTTGCCgagacacacacactgacttgTTTTAGGGGAAATACAATGAAGAATCGCTTGAATGGCTGAAAGGTTGTGCGTATTTGTTTGATGTGAGGTGATTGTAAACTACTGTatgtacacattttatttttcataaaaatagagagaaaaagaaaacgtcTATACTTCGTAATGTTGTAAATAAGGAGGTGAATATCAAGGTTGAATGTTGTGCATGTCAACCACTGTGCATTGGAGAGCACATATCGCATATTTATATCTGTAGTCCAGTATCAACAGTACTAGTTCGAGATCGAACACATTCACATTTTGAAAAGCTTTCTATCGGGTGTAGTTTagaagaaacactccacttttttttgggAAATGGGCTCATTTTACACCTCTCCTAAGAGTTAAACAGATGAGATTTACCATGTTTAAATCCTTTCAGCTGATCTCTGTGTTTGgcgggagcatttttagcttagcttagcataaatgatggaatcggattagaccattagcatctagctTAAAAACTGACTACTTAATTCTGAGTGGAAATGAAAAGCTGCTATTTTCAAGGCCGATACCACTAGTAACTCGCTCTCATTCTGgagtaataatcaagaaactttgttGTCGTACCATGGCTGCGTAAATTTCTCGATTATTACACTCAAATGAGTCATACGCTCTCAGAAATggaggtacaaaatctgtcacttgTGTGGTACCTTATCAAAAGGCACATTTTTGTTTCTAACAGGCCCTTACAGGTACATgataatacctaaaaagtacaaatgtggtCCTCgtggtaccttaaaggtacaaaggTCTACCGTAAAGCTACAATTGTCTGCCTGTATGgtacaaaaaatgtatgttttgaaaaggtaccactacagtgacagAATTCACAGCATTAGTGTGTAGTACACTGTGTAATTacagaagaatttttttttttttacagtttttttttaacatgctaatggtctaatccaattcaatgatttatgctaagctaagctaaaaatgctcctcCTAGGCCTCAAATTGgctgaaagcatttaaaaaatgctgaaacTCGGCTATTTAACTCTAGGAGACTCTTAAAATAAGCATATTCCCCCCCAAAAATgttggagtgttcctttaagcttgagtgtgtgtatgttagtaTGAGTCAGCGTGTTAAATGGTGTCTGACTCGAGGGCAGTGAGTTATTCCTCCGGTCTCTCAGGGTCTCAGAGTGTGATTTAACCTGgacatcacacacacgcacatatatttTCGTTCGTTCTCCCTCTAAATCATCTGTCAAGCCGACTGTCCTTGAGTCTCTGAGTGTCCCTCTCGGTTCCCCAGTATCTGAGGGCACAGTGGGTACCTTACGTTTTGTTTCCCTCGGCTTCCGTCTTGATTCACTGACCCTATTAGTGCCACGTCTGGATCAATGGCGCTGAAAGAAGTTGTTCTCACCTCTGAAAGGGTGGTCAGTCTGTCATGGGACGGTCTGATGCATCTGATCCGTCTGGCACCGAATAGGCAGAGGGCTTCGACGAAGTCCTAGTTTACATCCTGATTGAAAGGTCAGACCACAATCAGTGAATGTTGAGTGTAGTGGAAGCGGTTTTCGTCAACGCTTTTTAGCTCCTCATTAGAGGGAAAACGCACTGACCTTCCAGCTTCACGTCTCCAGCAGGAATACCGTAATGAAGGAACGAACGCCTTGAGAATATTAAGTTTCCTTCTGAGATGAGTCGATTTTCAGAGAGGTGTGAATATTCGTGGTTTCGATGTAACAGTCCTGGtaaacacacatgtacacacacatttaaaaagccTTAATGTCACTTGTCACAGACCCTTGCTTCGGTGTGTATATAGTATAAATACAATAACGTGATGATATACATAAGGTGATGTCACATCCTTGTGTACTGTACTTCACTGCTGTGAGCATGAAGGATACGTGCTTTTACTTAAGTTGAGGATACTTTATAATAGCGAGGTTCAATTCTTTTGCATTTTCAATGCATTTAATATCACAAACTATTCATTGTTAAGGAATTAATTAATCTAGGCGACTGATAATAcaataatgttatttataaacTGATAATCGTGTTAATATGGATCAATCTAGATTAATAATTCTCTTAAAACGCTTACTTGATGCTTTAAGATATGCTGAACAATTGAACCGTCTTGTAAAGTGTTCTatactgatgttttattttatttgacatgttttttacttcaatgatttgtgcttttattgttttattctgaGAGCTTTCTTGATGCCTGTAACGTGTTTGTGCTGTAAATTGTCGAGCAGCGCTCTCGAACTCTCATGGACACAAAGGACACATCTACTAAATGCTTTACCGCCTTGCATCGCTTTTAGGTTTCTTTTGGTTGTCTGAATGTCTTTGtaatgttgtcttttttttttatttggttgctTATTAAAGTCTTACTGATATTTGACAGTCA

Function

symbol description
si:ch73-22o12.1 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-27 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction.

Ensembl:

ensembl_id ENSDARG00000062831

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019466 True 6267 mRNA 0.41 7 10557504 10638020

Neighbor

gene id symbol gene type direction distance location
XLOC_009722 vars1 coding upstream 81690 10429770 ~ 10475814 (+)
XLOC_009721 ino80e coding upstream 128605 10422836 ~ 10428899 (+)
XLOC_009720 ino80e coding upstream 135014 10413551 ~ 10422490 (+)
XLOC_009719 CU929328.1 coding upstream 167717 10387719 ~ 10389787 (+)
XLOC_009718 NA coding upstream 177683 10378331 ~ 10379821 (+)
XLOC_009725 zgc:165409 coding downstream 86386 10724406 ~ 10734300 (+)
XLOC_009726 atp1a3b coding downstream 138668 10776688 ~ 10820909 (+)
XLOC_009727 dedd1 coding downstream 203143 10841163 ~ 10863041 (+)
XLOC_009728 pou2f2a coding downstream 280232 10918252 ~ 10991240 (+)
XLOC_009729 erfl3 coding downstream 391742 11029762 ~ 11142797 (+)
XLOC_009715 FP016064.1 non-coding upstream 232839 10324549 ~ 10324665 (+)
XLOC_009712 NA non-coding upstream 540791 10012335 ~ 10016713 (+)
XLOC_009704 NA non-coding upstream 1029198 9526080 ~ 9528306 (+)
XLOC_009733 NA non-coding downstream 723740 11361760 ~ 11376845 (+)
XLOC_009736 NA non-coding downstream 935169 11573189 ~ 11578407 (+)
XLOC_009737 NA non-coding downstream 942632 11580652 ~ 11583878 (+)
XLOC_009751 NA non-coding downstream 1479611 12117631 ~ 12139336 (+)
XLOC_009755 CR388102.1 non-coding downstream 1662149 12300169 ~ 12300286 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_04321053_04331396 NA coding CI01000016 null 4321053 ~ 4332239 (+)