CI01000052_01481868_01485237 (TSPY)


Basic Information

Item Value
gene id CI01000052_01481868_01485237
gene name TSPY
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000052
NCBI id null
chromosome length 3494004
location 1481868 ~ 1486849 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000052_01481868_01485237.mRNA
ATGAGTACAAACTCGGACAGCAACCAGCCGTCCGAAATTATCCAGAGAAAAAGAAGTGCAAGTCCGAGTGGAGAGAGTGAGTCCACGCTGCTCAAGCAGGCGAAAGTAAGTGATGAGGAACCAAGAAATGAGTCTCATGAAGATGCAGACCCCGAGAAAGTTGGGAATGGTGAGCCAAAGCATGGAGCTGAGCTCCCCGAAGGAACTGAAGAGAAGGATGTCGTAATTCAGGATGAAGCAGCCGCACAGGAGGAGAGCACGAGACAGGCTGGTGGAGGTGAGAGCGCGCGCCAGCAGTCAGATTACGCTGCCATCGCCGCAGCAGAGGCGCTTGCGAGTCTGACCGGTGGAGACGGGGACGAAGACTGTAAAGAAATGCCCTGTTCGTCTAAAAAAGCGAGCCGAGAGAAATCAAGGGATAAGTCCAATCGTCCAGGTTGCTCTCAGAGCGAGAGAAGGACTGAGGCAGCCGCGGCGGACAGCTCCTCATCCCTGCTGATCTGCGAGGACAGAGAAGACCCAGAGCAGGCATCGTTTGTGGATGATGATGAGGAGGAGGAGGAGGATGAAGACTCCCTTCCTGGCTCTTCCTCCACAGCCAGTTCGTCTGTCGCCTCTGATAATGAGGATAACGAGGACGGTGAGTGTGCCATAGTGTCGGTGAAGATGGCCCCGGAGGTGCGGCAGTCAGTCGCGCTGCTCGCACAGGTACAGATGCGGCTGGATGCTCTGGAGAAGAAAGGCGCGCGTCTGCATCAACGTCTGGAGATGAAACTGAGCCGCCAGCGACGCCCTCACCTGGACCAGCGCAGCGCCATCACGCAAGCTATCCCAGGCTTCTGGGTCACTGCTGTATCCTTTAACACAATTGAGTCTTTCAAGAACAACAAACTTGGATACCGCATCTGCTTCCATTTCCGGCGAAATCCGTTCTTTCAAAACAAAATGATTGTGAAAGAACTTCATCTTGGTATGGGAGGGTCTCCGGTGTCCTTCTCAAACCCAATTTTGTGGCACAGAGGACAGAATCTGGTCGGGAGCGGAGAACCGCGTCGAACATCACAGGGAGTCTACCAGAGCTTCTTCCATTGGTTCAGTGATCACAGCAACCCAGGAAGGGATGACATAGCACAGATCCTGAAGGAAGACCTGTACAGAAACCCTTTGAGGTACTACCTGACTCCACTGTGGGAGCCACGGGAGAATGGCAGCAGCGCTGCCAAACCTAAGGGCAGCAATAACGGAGACGAGTGTGTGATCATCTCAGATTCAGATGAAGATGAGGAGCAGAGTAGCCAAAACTTGGGGCAGGAGGATGAAGAAGGGGATGACCAAGTCAGAGGCTCAGAAGAGAATGACAGAGATGATGGGGAATCCTCCTATGAGGAGAGAGATGAAGAGGAAGTGGATGTTGAGGAAGTAGAAGAGTCACGTGACTCCGGTGGTTGTGAGGTCAGAGAGCAAGGACAGGAAGAGGAAGATATTGATGTCGATGAAGAAAAGAGTTAGGACCTGGTGTTGTCTCAGTTTCTTTTTATGCAGAATAGCATCATTAGATTTTTCTATGATCTATTTTACTGATTGTTTTCTGGATAAATTAAGAATCTGTTTAAAATAACAAGTGGTTTAACCGTGTCTTCATTGTAGATGGTACTTTCTATACATCAAAGATCATGAATATTCACATTCAGTGTGTGCACTCCTTCAAAAACGTAGTTTCTTTAAGATTTTACACAACTTTGCGTTAACAGATTTCACTGGGAGGGCTACTGATACCCATAATACAGCTCTTTTATCTCAGAACTGACTGTTTAAAGCTTGGGATTATAGACTGCACTTAGTTTAGTTGTTTCTGGCTAGTTTAGAGTCCAGGTTGTTGTCTTTTTTTGTCATTTTATGGAATACAGTAGCATCGTCTATCACCAACAAGTACATTTTTCACAGCAGGAGGCTACGTAATCATGACCAGTTATAAAAACACACTATGCTTTCCTGTTTCTACACTTAAGGGCCTAATCATATTCATCAGTCATTGCTATAATATTTTTGGTTAATTGTTGTTTGTAACTTTTTTTAGTATCCACATTTACAGAATTCTAGCATAATGAACGGCATTGTTATTGTCATGTCGTCTTATTGTTCATAAATTCTACCACCACATTTTAGCTGTAAGGAAAAAGGTCAAACATTCTCAAATGCACTTCGTTCTGAACCAAAACTAGATAACTCAGGGATGTTTACTGTCTTTACCCTCCTTATAGATGTGTTTTCCTTAAGTTGCGTTCATTCAATTTTGTGTCTTTAATACATAATACCTTTATGAGTGTTTGTTTATTGATGAACATTTAAATAATTGTAGGTTTATTTCACCTTGTGTACATAAGCAGCTAAAATCCTGACACTGTTATTCTTGCTATGGGGTTCAGTGTCATGTGATCCTTTTAAACTACTTGTCATTTCTAGGAATTGAGTTCTACACACTATCAACACATGGATGTTTATTCACTTCAATGAATAACAATTGTAATGTTATTTAAATGAGCAAAAGTTTGGCAAGGCCATCTCGTTGTGATATTTCTTTTGACAGCATGATGTGTGCACTCAATACTCTGTCCAGTTAAATGCTTAGATAATGTAAAAATAGTGAATATGTATGTACACATTTGTTCCTTTGACTTCTGTCATATTCATCTTTTTTTTTTTTTCCATTTGTTTCTAATAGTACTACTTCTGCTCCTTTTGCAATATATTTTTCTTTGGTCAGTCAGTTATTAGAGTAAAAACATTCTAAATTGTTGTTAGAGGAATCTGTAATAAGAAAACTGTGTTAAACATATTTAGTTTACATTGATTTTGAGTTTTGACCTGTAAAAGTTTGGTTTTAAAAAAATTGAAAAGCTGTTAACTCATTGTAAGTATACTGGATTGTACTTGTTTTTCCCCACGAGGCCAGTGGTTTGTACATAATCCTTTCCCTTAAAAAGGGTTTATAATATGTTATTGAGTTATTAGGGTAGATTTGACCCACAATATCAAAGAGACGCTATATTTTGTGTGCTAAATTTTATAGAGAACTACAATTTTTAAATGTTTTGGTTTGGTTTTTTGTTTTCCATGTCAA

Function

symbol description
tspy Predicted to enable chromatin binding activity and histone binding activity. Predicted to act upstream of or within nucleosome assembly. Predicted to be active in chromatin and nucleus. Human ortholog(s) of this gene implicated in gonadal dysgenesis; prostate cancer; and sudden infant death syndrome. Orthologous to several human genes including TSPYL1 (TSPY like 1) and TSPYL2 (TSPY like 2).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11285 TSPYL2, CINAP, DENTT; TSPY-like 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000052_01481868_01485237.mRNA True 3121 mRNA 0.42 6 1481868 1486849

Neighbor

gene id symbol gene type direction distance location
CI01000052_01468551_01480835 FOXP3A coding upstream 886 1468551 ~ 1480982 (+)
CI01000052_01440901_01449517 SUV39H1, SUV39H1B coding upstream 31008 1440901 ~ 1450860 (+)
CI01000052_01405500_01408668 TPP1, TAF10 coding upstream 73006 1403814 ~ 1408862 (+)
CI01000052_01383491_01401660 NA coding upstream 79639 1382150 ~ 1402229 (+)
CI01000052_01368837_01373810 OPN7C coding upstream 107670 1368837 ~ 1374198 (+)
CI01000052_01509450_01515974 SEMA3GA coding downstream 22601 1509450 ~ 1516292 (+)
CI01000052_01550561_01556654 STK38, STK38A coding downstream 63712 1550561 ~ 1557010 (+)
CI01000052_01605314_01607566 NA coding downstream 116941 1603790 ~ 1607908 (+)
CI01000052_01646159_01681413 NA coding downstream 158287 1645136 ~ 1681417 (+)
CI01000052_01698030_01702872 ATP5F1 coding downstream 210541 1697390 ~ 1703488 (+)
G223444 NA non-coding upstream 120068 1360093 ~ 1361800 (+)
G223579 NA non-coding upstream 133527 1348122 ~ 1348341 (+)
G223464 NA non-coding upstream 145468 1335864 ~ 1336400 (+)
G223414 NA non-coding upstream 176803 1303648 ~ 1305065 (+)
G223552 NA non-coding upstream 203260 1278378 ~ 1278608 (+)
G223597 NA non-coding downstream 8888 1495737 ~ 1495947 (+)
G223602 NA non-coding downstream 24062 1510911 ~ 1511141 (+)
G223605 NA non-coding downstream 42393 1529242 ~ 1529472 (+)
G223616 NA non-coding downstream 122289 1609138 ~ 1609416 (+)
G223618 NA non-coding downstream 129715 1616564 ~ 1617578 (+)
G223545 NA other upstream 210941 1270492 ~ 1270927 (+)
G223694 NA other downstream 562477 2049326 ~ 2104299 (+)
G224953 NA other downstream 1944287 3431136 ~ 3460136 (+)

Expression


Co-expression Network