G225076


Basic Information

Item Value
gene id G225076
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 99369 ~ 103780 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU255309
CGAAGATGAACGAAAGGAACGACATGAGGGTGAGTAATTCATGACAATTTTCCTTTAAACTGAATATTTATCTAATCTCAAAATTAATATCCATTTTTAATAATGCACATTACAATAATGGGATGCCTAAATATACTTAAAATGACCAATTTTAGTTTTTAGTGTTTTATTTTTAAAACTTTAATTAGTGTAGTTAGTATAGAATTATAATAATTATAATTATAATATTTGGTCGTGGTCCTTTCCCAGTCCCACTCCCCTCTCTCTCCCCCATCGCAAAATAAAGGTAAAAAAGCCCAAAAAATAAAATAATAATATATGACATTTATCAGTTATTGGTCATAACATGAAAACAATAATTGGATTATCTGTATCAGCCAGAATTGTATTATCTGTGCATCTGAGACTGCTGATATTATATGGCATATTGTGAGTCACTGTCTTAAAACACAGACTAAATTATGTAATTAGAAAAATAAAATCAGTGGTGCGAGCCTTACTCTACATATTAGCTCTCTCACCTCCATTAGCGTCTCCTCCGGCAGTTCTGGTGCTTCAAAGGTGATGAATCCATCCAAGCTGGGCGGGGAGGTGCCGTAAGGGACGTAGCGCAGGCTGCTGGGAGCCGCTTCCGCTCCTGGCGAGGAGCTGCCGATGGTCATGCCCGGGGGAGAACCCATGTACACCTTACCACTGGTGGAGCACAGCGAGCCGGCAGAGCTGTTGGAGCCTACTGCGGACACATAGACACAGAAATCAGCCACATAGTCCTTAGCGACTACTTGAGTTAGGAATCTAACCCCCGGTTTCACAGACAAGCTAGTCCTAGACTAAAATGCATTTTTGAGCAGTTTTAACTGAAAGCAACTTGTACTGACATGTCACTGCCATGGTTTTGTCTCAAGATGCACACCAGTAATGTTTTTTTCTAGTGTACGTTTATAAAACCTACTTAAATATCCTAATTGAACTAAGGGCTAATCCTGGCTTAGGCTAAGCCCCGTCTGTGAAACCGGGCCTATAAGCTTTAGTTTAATCTTGACCATCAGAAGGTGTTTAAAAACAGTGGCAGTGACACAGGCATTGAACATGTAGTATGGCAGCTGAAGCAGTGGTGTATGGGGTGGGTTTATGAGGCGAAGCCCCTCACCTGAGGTGGTGCGAGGGCGGGAGGCGAGATGGCTGCAGGTGGGAGGGGTGCTGCTGTTGGGGGGCGAGCCCACCGTGAACACAACGTTGCGGGGACTTGCCCCGCCCGCTGCCAAACCGCAAGTCCCTGCCGGGGCTGGGGAGGGATGCACACACAGGGGTCACTCACTAACACATACAAACACTGGCAGCCAATCAGAGCACTTCATGCAGGCCAGAAGCTCAAATGATGTCAATGGGGTTATATTTAGCAGAAATAAAATAATATTGGTATGAAATATTGGACATTACAAAAAAACTATAACAAAATGAGAACACGGGCTACCTGTGTCCATAGGCCTCTCTGCGTTGAGGCTGTCTGTGCTGCCCTTGTACGGCTGTCCTCCTAAAGTGATCCGTACCGGCTGCTCAGACAGTCTGCCAGCACTTACAGACCTGAGGGAATAAACAAGTTCAGCTTGTTTTTATATGCATATGGAATTTATAATACAGGGGTCAATGACATGACTCTTATTTCTTGTCCAAATCAATTCATTTATTCAAATACATAAAAAATGCAAACAATGACATCAATACATTCCCTTTTTTTCCCCCATGTTTTTTCATATTTTTTAATGATATTTCTTTGGGGCATAAATGTCAGTGTCCTGATAAAATAATGAAAAAAAAAAAAAGTAGTACATAAAATAGGAAATGATATAGAAAATTTTCTAGGTCAATAAGTCAAAATTTTTGTGACAATGCAAGGTTAGTTCAGGTTGTAAGATGTCACGTGCAACACCCTAAAAGATTACATTTATGAATTAATAATTCATCATATAATACTTTTATACACTAATGTTTAAAAGTTTAGGGTCAGTAAGACTTTTTTGTTTTTGAAAGAAACTCACCAAGGCTGCATTTATTTGATTAAAAATACAGTAAAAAGTGTAATTTTGTAAAATAAAAGAATTTAAAATAACGTTTTTCTCTTCAAATATATTATAAATGTAATTTATTTCTATGATGGCAAATAATTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTCAAGAAACATTTATTATTATTATCAATGTTGAAAACAGTTTTTTGAATATTTTGTATTTGAAAATTAGAAAGTTGAAAAGAACAGCATTTATTTGAAACAAATCTTTTGTAAGACACTTTTCATCCTTTGCATGCTTGCTTATTATTATGCATATTATTATGCATTATGCACATATCAAATGTTGTTTGAGCAAACTTTTGCCGACCTGCCAAAGGAAGTCTTGCTGGCCTCTGGAGCAGGCTGTTGGCTGCTGGGATACGCCGAGCAGTGATGTGCACAGAGGTCACGTCCATCCATCAGCATCCTGACTGGGGTGGGGCTGTCAGCTATACCCTGCTGAGAGGCCAGGGCCAGGAGGTTGCATGAGGCTTGAGTTTTAGGGATTTTAAATGGAGCGGTTGCCTTGGGAGAGCCGATGATGGTGGGCAGCGGCGACTTTGTCAGCCAGTCAGAGGTGCGAGGGGAGGAGCCAAGGTGCTTGGTTGGGGAGGTTCCTAGGTTGCCCGGGCGACCGAGCTGAGGGGAGTGGCTGGTGGGGTAGGCGGATGAGGTGGGGTGCACTGGGTCAGACAGCTGCTTGTGTAGCTTCTGCTTGTTCTGATAGATGTCGGTCAGCGTGGGCGCACTCTGAAGACGAGTGCCCAGTAACTGAGAAGATGGCACAGGGGAACCTAAAACATAAAAAGTGTGATTGGATTGGATTTTGAGGTGTGGGCATTGCACTCAAAATTGAAGGCAGATAAATGCAAGTTTACAGAAAGGGGCGGGGTTTAAGCAGACTAAATGATTGGAGAAGACCTGTATACATCACCAGAGATAAGTCTGTTGCTTTCACTTTGTGACATTATGATTAAACATTACAAGGTCAAACTATTTTCGGTTATGTGTTATTTTAAGGTATACGGTATATATTAAGGTATTTGTAATTAAACATTTAAGTACTTGGTACTATTAATTAACAACATGTACTTAGGGTTAGGGTTTGGTTTAGGTTAGTTGCATGTAATTATGCATTATTTACTGTTATTATTATACAGTAGTAACTACATGTAATATGTAACAAGGACACCGTAAAATGTGTTAATAGGGTGAATTATCATTTCATACCGACTTGTAACATTTTGTTGCAATGGCTCACCACATGCTACATGATTTAACCACTAGGTGGCACTGCAGTTTCTATATTTGAGATGTGTACCATAAGACTAAAACAAGGTCGCTGAGTTTGTCTGCTGTTTAGACACGATCATTGAGTTCACAGGTTTGAAGAGGTTTCACACAAAAGCTCACGAGCCTGTTTGTTTCTACAGCATGCATTGTTCCCGATCGCTTGATGAGTTCTCAGCCTTAACGAGCAGCTGTCTCCATGGAGATTAGAATAACACAGACATGCTGTGACCTAACCGGAGGAAGCGACTGTGGCTACTGCTTGTGAGACTGTTAATGGTGTCACTTTGAAGAGGAAACAGCAGTGCTTTGGGTTCTTTCATGTCAATCTTTTGCATTTAAACTCACCTCCCGAGGAGCTGCGACTGCGGGCCTCGTGGCTCTGGGGGTGTCCGCAGCAGCAGTGGCCAAGCTGCTCAGGAATAGTGCCCACTGGGGAACAATTACACACAGACACAGACAGACACACATAAAATAGGCACGTCAGGACATGTCAATCTTTAAAAATACAGTTACCCAGTAAACATAAAACAGGAATGACAGCGGCAGCTCTTACCTAGTGGAGAGGGAGAGTAGGGCCGGGAACTGCCTGTAGAGAGACGTCGTCCCACAGTTTGGACCGTATCTGCAGGGCTTGGTGACCCAGACACCATTTTAGGGAAGCCCATGGGGCTTGTGTTGGAGCGCCGCACTGTGCCTGACCTGTATACATTAAAAAACATCATACTGTAGTAGTATTTGACAACCTTACAATTGTATTTCACTGAAACAGTTTTTCTCAGCACAAACTTCAATTTTCGTAACCAAAAATTATGCAATTATGTTAAAACCAACTGGTCTCGATGTGATTTTATTGGACGTATGATGTCAGTTCTCCTCAAGATCACATAGGTGTCCCAAGAGAGTAACTCACAGGTGCAGTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU255309 True 4329 lncRNA 0.42 2 99369 103780

Neighbor

gene id symbol gene type direction distance location
CI01000053_00088985_00089824 NA coding upstream 9511 86737 ~ 89858 (+)
CI01000053_00064905_00080433 USP2, USP2A, USP2B, USP21 coding upstream 18557 63803 ~ 80812 (+)
CI01000053_00047478_00053636 NA coding upstream 45520 47342 ~ 53849 (+)
CI01000053_00019833_00041450 NA coding upstream 57590 19833 ~ 41779 (+)
CI01000053_00006482_00011540 NA coding upstream 87583 6030 ~ 11786 (+)
CI01000053_00133800_00137515 ALDH3A2A coding downstream 30020 133800 ~ 137515 (+)
CI01000053_00146212_00152152 NA coding downstream 42047 145827 ~ 152704 (+)
CI01000053_00190871_00208802 TPST1 coding downstream 87091 190871 ~ 208802 (+)
CI01000053_00296442_00323444 TIMM50 coding downstream 192662 296442 ~ 323444 (+)
CI01000053_00328885_00333481 DLC coding downstream 224538 328318 ~ 333724 (+)
G225092 NA non-coding upstream 82413 16610 ~ 16956 (+)
G225103 NA non-coding downstream 5286 109066 ~ 109289 (+)
G225108 NA non-coding downstream 51750 155530 ~ 155902 (+)
G225144 NA non-coding downstream 153461 257241 ~ 258204 (+)
G225173 NA non-coding downstream 263742 367522 ~ 367893 (+)
G225187 NA non-coding downstream 346551 450331 ~ 450769 (+)
G225952 NA other downstream 1769094 1872874 ~ 1873295 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other downstream 2489447 2592558 ~ 2595467 (+)
G226292 NA other downstream 2932822 3036602 ~ 3046783 (+)
G226347 NA other downstream 3168594 3272374 ~ 3274911 (+)
G226399 NA other downstream 3517018 3620798 ~ 3697529 (+)

Expression


Co-expression Network