CI01000053_00296442_00323444 (TIMM50)


Basic Information

Item Value
gene id CI01000053_00296442_00323444
gene name TIMM50
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 296442 ~ 323444 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000053_00296442_00323444.mRNA
ATGTCGGCGGTGTGTATGTATCCCATGTGTGTCCGGGCTAGCCGGGGCCTCCTCCGACTGAGGCAGGGGGCCAACAGCTCCATAGCCCCTGCGGTGCTGGATGTTGTCCGGTCACTCTCCGCTGACACATCTAGTAGTAGTGCCACAGGTGGACTGGCCCAAGCAATACTGCAAGAAAGGCTTCAGCAGCAGCAGAAAAGCCAGGACCAGCCTCCTCCAGAGGGTGATGACTCTGCTCACAAGAAAGATGAACAGGGTGAGGACAAGAAACAGAAAGAGAACACTGCATACGCTAAGAAGATGGTCCTTCGGTTAGCAGGAATTATGGGACTTGGAAGCACAGTCGGCATCGTATACATATTCGGTGAGTTTGCCTGTTGCTTTCTTATGCTAAGGGTGGGCACCAGAGGATTGGAATATGTTCCCGTCATCCAGCAGCTCAGAAGAACCTTCAAATATTTCAAAGATTACCGACAGATGATCATCGAGCCCACAAGCCCAAAGCTTCTCCCAGACCCACTGCGAGAACCGTATTACCAGCCTCCATACACCCTAGTGCTGGAGCTCACCGATGTCCTCCTCCATCCAGAGTGGTCGTTGGCCACAGGCTGGCGTTTTAAGAAGAGGCCTGGCATAGACTATCTGTTCCAGCAACTGGCCCCGCTCTATGAGATAGTCATCTTCACATCAGAGACGGGCATGACGGCGTTCCCCTTGATTGACAGTATAGATCCTCAAGGATTTGTGATGTACCGGCTTTTTCGGGATGCTACACGCTACATGGAGGGCCACCATGTTAAGGACGTGTCTTGTTTGAACAGAGACACCTCTAAAGTCATTGTGGTGGACTGTAAGCGAGAGGCCTTCGGTCTACAGCCTTTCAACGGTTTGGCGCTGCGCAAGTGGGATGGCAACTCGGAGGATCGCACGCTCTATGACTTGGCTGCCTTCCTTAAAACTATTGCCATCAGCGGAGTGGAGGATGTGCGTTCAGTATTAGAGAACTACGCCCATGAGGAAGACCCCATTGAAGCTTTCAAAAGAAGACAAGCACAGCTTGCACAGGAAGAAGAACAGAGACTTTCAGAGCTTGTGCAACAGAAGAAACAGGGACTCTCATTAGGTACCATCGCAGGTCGTTTCTTTTCTCGGAAGCAGCAG

Function

symbol description
timm50 Predicted to enable protein serine/threonine phosphatase activity and protein tyrosine phosphatase activity. Acts upstream of or within apoptotic process. Predicted to be located in mitochondrial inner membrane. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including immature eye; margin; midbrain; pectoral fin musculature; and segmental plate. Human ortholog(s) of this gene implicated in 3-methylglutaconic aciduria type 9. Orthologous to human TIMM50 (translocase of inner mitochondrial membrane 50).

GO:

id name namespace
GO:0006915 apoptotic process biological_process

KEGG:

id description
K17496 TIM50; mitochondrial import inner membrane translocase subunit TIM50

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000053_00296442_00323444.mRNA True 1161 mRNA 0.52 9 296442 323444

Neighbor

gene id symbol gene type direction distance location
CI01000053_00190871_00208802 TPST1 coding upstream 87640 190871 ~ 208802 (+)
CI01000053_00146212_00152152 NA coding upstream 143738 145827 ~ 152704 (+)
CI01000053_00133800_00137515 ALDH3A2A coding upstream 158927 133800 ~ 137515 (+)
CI01000053_00088985_00089824 NA coding upstream 206584 86737 ~ 89858 (+)
CI01000053_00064905_00080433 USP2, USP2A, USP2B, USP21 coding upstream 215630 63803 ~ 80812 (+)
CI01000053_00328885_00333481 DLC coding downstream 4874 328318 ~ 333724 (+)
CI01000053_00373617_00376651 CHP2 coding downstream 50173 373617 ~ 376836 (+)
CI01000053_00385767_00390328 RNASET2L coding downstream 62323 385767 ~ 390328 (+)
CI01000053_00424419_00427247 NA coding downstream 100975 424419 ~ 427249 (+)
CI01000053_00475651_00486432 NA coding downstream 149865 473309 ~ 486561 (+)
G225144 NA non-coding upstream 38238 257241 ~ 258204 (+)
G225108 NA non-coding upstream 140540 155530 ~ 155902 (+)
G225103 NA non-coding upstream 187153 109066 ~ 109289 (+)
G225076 NA non-coding upstream 192662 99369 ~ 103780 (+)
G225092 NA non-coding upstream 279486 16610 ~ 16956 (+)
G225173 NA non-coding downstream 44078 367522 ~ 367893 (+)
G225187 NA non-coding downstream 126887 450331 ~ 450769 (+)
G225201 NA non-coding downstream 171903 495347 ~ 495601 (+)
CI01000053_00509280_00523383 NA non-coding downstream 185840 509280 ~ 524344 (+)
G225135 NA non-coding downstream 201047 524491 ~ 525947 (+)
G225952 NA other downstream 1549430 1872874 ~ 1873295 (+)
CI01000053_02594164_02594541 DYNLL6, DYNLL1, DYNLL2A, DYNLL2, BRAFLDRAFT_114344, DYL1, DYNLL1.S, BRAFLDRAFT_130244, DYNLL1.L other downstream 2269783 2592558 ~ 2595467 (+)
G226292 NA other downstream 2713158 3036602 ~ 3046783 (+)
G226347 NA other downstream 2948930 3272374 ~ 3274911 (+)
G226399 NA other downstream 3297354 3620798 ~ 3697529 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009170 timm50 coding NC_007126.7 CM002899.2 20475694 ~ 20528494 (-)