G228439


Basic Information

Item Value
gene id G228439
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5762052 ~ 5763009 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU259222
TATATATTGACCGGGGGCAAATGTAACGGGGGCAATTGTAACATTTCAAATTACACCAATCAGAAACGAGACAGAACCATGAAACTCATTTTGCATGTGCTCTGTGGAGATCCCTCTCTGCATGCCAAAGCACAAACTTCTAAATCATTGGTTAAGTTTTTCTACAAAGACTCATTTGTGAGGTATAAAAGTTTTTTTTTTTTCATCTACAGTATTTTCCTCATACTGTCTTAAACATTAATGTTTATGAATTTAAATCTGTCTTGTTTTGATGACCATTCTGTTGTCTAACATTTGATATCTTTGTCAAACATTAGCTTTGTTGTTTCTAGCTAGCAGGGTAGCTTGTCACGGGGTGGTACAGTCGGGGGCAATTGTAACACTGCATTACAGTTGCCCCAGACACCATCAAAATAGTGTCCAGCTTAGTAAGGACATCAAAATAGATTGATAGATTCCAATAATTTAAGAAAAGTGTTTTTGCCTCTCAATCTGGGGATCCATATTACTGAGTAGGCCCTGTACACTCTCTGTTCTCAGCATGTTTAGTTTCAGAACAAGGAAAACAGCAAGGGGAGTTAATTAATTGTTTTGGATAATATGGATGTAATGGATATTAAATAGTTTTAACTATATCTATATTCTCTGGAGTTTATTGTGGTCATTGGTATTTATATGAAGGTATTACATGTGTTGTTACAATCGCCCCGCATGTGGGGGCAGACGTTACATTTAACTTCTAATGTTTCAATCAATATTGTGACTCTAACATTGCTTGTAAAAACATTTGGTGACTGTTAACAAGTAGAACACAAGTTACTGACATAAAAATTGTATCCAAATATTTCAAAAGGTTTTTGAGTAATGACGACATGACCAAAATTTGTTACAATTGCCTCCGGTCTCCCCTACATGATGCATGTAGTCTTCTGTTCCAGATGTATACCACATTATTATT

Function

NR:

description
PREDICTED: lysine-specific demethylase 5A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU259222 True 958 lncRNA 0.35 1 5762052 5763009

Neighbor

gene id symbol gene type direction distance location
CI01000053_05704944_05710574 GCK, GK coding upstream 50931 5704848 ~ 5711121 (+)
CI01000053_05593016_05597420 ORAI1, ORAI1A coding upstream 164564 5593016 ~ 5597488 (+)
CI01000053_05589379_05590208 NA coding upstream 170950 5588892 ~ 5591102 (+)
CI01000053_05563771_05573792 RNF34, RNF34A coding upstream 188087 5563771 ~ 5573965 (+)
CI01000053_05526931_05550454 NA coding upstream 211580 5526629 ~ 5550472 (+)
CI01000053_05764395_05769061 NA coding downstream 1386 5764395 ~ 5769085 (+)
CI01000053_05784784_05786704 DUSP2 coding downstream 21257 5784266 ~ 5787658 (+)
CI01000053_05796556_05798076 ADRA2B coding downstream 32864 5795873 ~ 5799824 (+)
CI01000053_05818799_05861616 NA coding downstream 55790 5818799 ~ 5861872 (+)
CI01000053_05920285_05920932 NA coding downstream 157084 5920093 ~ 5921020 (+)
G228436 NA non-coding upstream 4437 5757402 ~ 5757615 (+)
G228425 NA non-coding upstream 23801 5737817 ~ 5738251 (+)
G228360 NA non-coding upstream 33055 5717819 ~ 5728997 (+)
G228430 NA non-coding upstream 49626 5712223 ~ 5712426 (+)
G228369 NA non-coding upstream 65499 5691526 ~ 5696553 (+)
G228698 NA non-coding downstream 76816 5839825 ~ 5840071 (+)
G228699 NA non-coding downstream 77210 5840219 ~ 5840433 (+)
G228716 NA non-coding downstream 120456 5883465 ~ 5884938 (+)
G228717 NA non-coding downstream 120609 5883618 ~ 5883878 (+)
CI01000053_05471449_05512831 LRRC75B other upstream 248978 5471449 ~ 5513074 (+)
G228257 NA other upstream 383603 5375553 ~ 5378449 (+)
G227317 NA other upstream 1346459 4414951 ~ 4415593 (+)
G226399 NA other upstream 2064523 3620798 ~ 3697529 (+)
G226347 NA other upstream 2487141 3272374 ~ 3274911 (+)
CI01000053_06725452_06758944 NA other downstream 960190 6725452 ~ 6758944 (+)

Expression


Co-expression Network