CI01000054_04671351_04681181 (PEF1)


Basic Information

Item Value
gene id CI01000054_04671351_04681181
gene name PEF1
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 4670151 ~ 4681361 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000054_04671351_04681181.mRNA
ACACCATGTAAACAGTGACTCAAAGTTCCTACAATGAGCAGTTTTCCATTGTTTTAACCAATCCGATGGAAAATATGAGGCTGCTCCTTTGACAAACGTCATAACCAACCAATCAGCTTCAAGAGGCGGGTCTTATTAAATACAGCCCGATCGCTCCATTTGCTAAAGATCCTCTGCGGAATGAGTTATCAATACGGACAGGGTTATCCAGGACCAGGTGGTAACGCTCCCCAACGCCACCCGCCTCCAGGGGCACCTTATGGAGGAGGTCCTGCTGCTGGACAGTATGGTTCACCTTATGGTGGTGCCCCTCCAGGGCAACAGTATGGTGGAGGGGTTCCATATGGGTCTTATGGTCAACCCAGACCAGGAGCACCGTACGGTGGGGGCCAAGCTCCAGGTGGTCCATATGGAGGTTATGGACAACCCCAGAGTGGACCATATAGTCAGCAGGCACCTGCAGGTAACATTCCTCCCGGTGTGAACCCTGAGGCCTACCAGTGGTTTTCTTCTGTGGATACAGATCATAGTGGCTACATTAACGCAAAAGAGCTGAAGCAAGCACTCATGAATTCCAACAACTCCGCTTTCAATGACGAAACCTGCATTATGATGCTCAATATGTTTGACAAAACCAAATCCGGACGCGTAGATGTATTTGGTTTCTCTGCACTGTGGGTGTTTCTGCAGCAGTGGAGGGCAATGTTCCAACAGTTCGACCGGGACCGATCGGGATCAATTAACAGCACTGAGATGCACCAGGCATTATCTCAGATGGGCTACAATCTGAGTCCTCAGTTTATTCAGGAACTGGTGAATCGTTACTCTAAAGGCGGTGTGAACGGAGTTCTCCAGCTGGACCGCTTCATTCAGGTGTGCACGCAGCTCCAGAGCATGACCCAAGCCTTCCGCGAGAAAGACACCAGCATGACTGGCAACGTGAGGCTGAGTTACGAAGACTTCCTGTCTGGTGCCATTACCAGACTGATGTGTATTTCTGAGTCTGCAATCATGTGGCCAGTGATCCTGACTGCCATGCGCACTTATGCACCCTATGTGACCTTCCCAGTGGCCTTTGTGGTGGGAGCTGTTGGATACCACCTTGAGTGGTTTATCAGGGGCACCCCAAATGCCCCAGGAGAAGAGAGGGGCATTGCAGAGCTACGGGAGGATAGAAAATTAGAGGAACTGACCGGGAAGGACAGCACACAGGTCCTTAGCCTGAAGGACAAACTGGAATTCACACCGAGGGCAGTGCTGGAAAGAAACCGACCGGAGAAGAACTAAGTTTTATTAAATGTCATGAAGTCCTGCAAGATTACTATATAATGATGTACAACTTCTCAAACTTTGGACTCATTTGTCACCCTCCACGGCCCCAGGGACGAGAACTTTATCCTACAGTATGCCACCCTAATTACATGGAGTCTAGCTGTAATATTTACCAGGCCTGCTGGTGGAACTTGACTGCTGAGAGAATTTTTTACAACTTTCATTCTTTGAGACTTAATATTCATCTTCTGCCCTTAGGCATGCAGACACATGACTATAAGTCCTAACTTGGAAAGCTTTAATAAGTTTTCCATTCGTGCTCCCTGTCATATGCTCATGAGACTGAAGCTCAAAGAAAGACCACCTTTGTTAAGTTTGTCTGCGTGAATAAA

Function

symbol description
pef1 Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be involved in COPII vesicle coating; mesenchymal cell differentiation; and positive regulation of protein monoubiquitination. Predicted to be located in cytoplasmic vesicle; endoplasmic reticulum; and membrane. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Orthologous to human PEF1 (penta-EF-hand domain containing 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000054_04671351_04681181.mRNA False 1664 mRNA 0.48 6 4670974 4681361

Neighbor

gene id symbol gene type direction distance location
CI01000054_04463229_04486856 DLGAP3 coding downstream 184118 4462888 ~ 4486856 (-)
CI01000054_04411682_04448848 NA coding downstream 222126 4411429 ~ 4448848 (-)
CI01000054_04264074_04331270 THSD7AA, THSD7A coding downstream 339704 4263862 ~ 4331270 (-)
CI01000054_04210959_04214380 NXPH1, NXPH4 coding downstream 456594 4209840 ~ 4214380 (-)
CI01000054_04067809_04076131 NA coding downstream 594212 4067799 ~ 4076762 (-)
CI01000054_05292456_05317677 NA coding upstream 610938 5292299 ~ 5318991 (-)
CI01000054_05341497_05372926 ANGPT2B coding upstream 659749 5341110 ~ 5372926 (-)
CI01000054_05685529_05686880 NA coding upstream 1004139 5685500 ~ 5687414 (-)
CI01000054_05711250_05711861 NA coding upstream 1029261 5710622 ~ 5712639 (-)
CI01000054_05822181_05823458 ZN706, ZNF706, ZFP706 coding upstream 1140807 5822146 ~ 5823684 (-)
G232013 NA non-coding downstream 5307 4665428 ~ 4665667 (-)
G232012 NA non-coding downstream 5733 4664985 ~ 4665241 (-)
G232003 NA non-coding downstream 27652 4643046 ~ 4643322 (-)
G231963 NA non-coding downstream 28844 4607262 ~ 4642130 (-)
G231961 NA non-coding downstream 68675 4590696 ~ 4602299 (-)
G232051 NA non-coding upstream 91469 4772830 ~ 4773118 (-)
G232076 NA non-coding upstream 154495 4835856 ~ 4836109 (-)
G232102 NA non-coding upstream 221705 4903066 ~ 4917761 (-)
G232147 NA non-coding upstream 242561 4923922 ~ 5139595 (-)
G232236 NA non-coding upstream 461463 5142824 ~ 5153011 (-)
G231645 NA other downstream 688151 3981847 ~ 3982823 (-)
G230908 NA other downstream 1607631 3057648 ~ 3063343 (-)
CI01000054_02857402_02860451 NA other downstream 1810401 2857402 ~ 2860573 (-)
G230923 NA other downstream 1833292 2837237 ~ 2837682 (-)
G230178 NA other downstream 3440839 1185533 ~ 1230135 (-)
G232274 NA other upstream 524838 5206199 ~ 5209240 (-)
CI01000054_06629482_06641861 TRIQK other upstream 1946721 6628082 ~ 6642160 (-)
CI01000054_07165957_07169539 HEYL other upstream 2484074 7165435 ~ 7169539 (-)
G235216 NA other upstream 4566678 9248039 ~ 9248538 (-)
CI01000054_09483912_09484282 MRPL36 other upstream 4801786 9483147 ~ 9484282 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014199 pef1 coding NC_007130.7 CM002903.2 37120491 ~ 37134211 (+)