G230150


Basic Information

Item Value
gene id G230150
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 657681 ~ 670511 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU261168
TGAAAAGCATGTACAGGTGGTTGCCGCTGCTGAATAGGAACTGAGGCACCTGGGTACCGTTGAACGAGCCAATCAGAGGAGAGAGAAGATTGGGTCCGTCGTGAAGCTCCAGCAAATCGCAATTCAACTCTGTCTGAAATTTCTCAAATGTGATTTTGATGGAGCGTCCCGGTTCAGCCTCTATGACCCACTCACAGTTGAGTGAGTCTTTGTAGTAACCGGGCCACCCAGGAGATAAAATAACTCCACTAGGAGCTGAAAAATGGCCTCCACAGGGAGCTTCACACTTTGGGATGGGGCCGCTCCACATCACCTTCCCACCGTTCAGCTCACAAGTGATGGTTTCTGCTCCCTGGGTCTTAATGAAGCCGTCCTCGCAGATGATCGAGATGGAGCTGCCCAGCTGGAAACTGTCACCGAAACGTCTGGCGTTCAGGGGGACTCCTGGATCCGGACACTCATTATGGCCAAATGTGGTGTAGGTGATGTTGAAACCTCTGCCTGACATGGAGTGGTCAGCCTGGAACTCCAGCCGGAGAATGTTGCTGTTGCTGGTGAGGTGGGACGGCACCTCCGCCCCAGTGAAACGGCCAAGCACAGACGAGTCTAGCATCTCTCCATCCTTCACGGTCAGGATGTCGTATGGAGCCTCTAGGTCAAAGTCATTGAAAGCCAGGTGGATACGGCTGCCGGGCTCTGATAGGATCAGCCACACACAGTTAAGGTTGTTCCCATAGCCCTCTGGGTAATCCGGAGAGAGAACCGTGCCCATGGGAGCAGTGAAGTTCGAAAGACAGGGAAAAATGCAGATGGGGATGTTGGCAGACCACTGGTTGTTGTTCTGACAGGATATTGTTTTCTCTCCAATGAGCTCAAATCCAAACTGGCACTCAAAGCGTAGCACGTCACCATTTGAGAACCCATCTCCTTCTCTCATTCCATACAGAGGGGTGCCTGGGTCCCCACAGCTCTCCTTGTCGATTTCTTTGTAGTTGATCTTGAAGCCTATAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU261168 True 1014 lncRNA 0.52 6 657681 670511

Neighbor

gene id symbol gene type direction distance location
CI01000054_00195914_00197098 NA coding downstream 460462 195226 ~ 197219 (-)
CI01000054_00188121_00191695 NA coding downstream 465723 187797 ~ 191958 (-)
CI01000054_00147623_00148143 NA coding downstream 509426 147591 ~ 148255 (-)
CI01000054_00094396_00130159 NA coding downstream 527496 94260 ~ 130185 (-)
CI01000054_00888859_00895223 LRRC14B coding upstream 217937 888448 ~ 895223 (-)
CI01000054_00898039_00902381 NA coding upstream 227031 897542 ~ 902381 (-)
CI01000054_00924015_00926256 GATAD1 coding upstream 253223 923734 ~ 926256 (-)
CI01000054_00929337_00955240 ANKIB1A coding upstream 258621 929132 ~ 955674 (-)
CI01000054_00965111_00970121 LYPLA2, LYPA2 coding upstream 294131 964642 ~ 970121 (-)
G230108 NA non-coding downstream 504 454492 ~ 657177 (-)
G230092 NA non-coding downstream 104772 406394 ~ 552909 (-)
G230085 NA non-coding downstream 266938 390527 ~ 390743 (-)
G230073 NA non-coding downstream 359513 297937 ~ 298168 (-)
G230063 NA non-coding downstream 402066 255323 ~ 255615 (-)
G230305 NA non-coding upstream 182931 853442 ~ 853773 (-)
G230308 NA non-coding upstream 186825 857336 ~ 857561 (-)
G230311 NA non-coding upstream 190410 860921 ~ 861246 (-)
G230148 NA non-coding upstream 193447 863958 ~ 886225 (-)
G230145 NA non-coding upstream 214743 885254 ~ 888159 (-)
G230178 NA other upstream 515022 1185533 ~ 1230135 (-)
G230923 NA other upstream 2166726 2837237 ~ 2837682 (-)
CI01000054_02857402_02860451 NA other upstream 2183630 2857402 ~ 2860573 (-)
G230908 NA other upstream 2387137 3057648 ~ 3063343 (-)
G231645 NA other upstream 3311336 3981847 ~ 3982823 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00021857 csmd3 coding CM030130.1 CM030130.1 33382419 ~ 33395225 (+)