XLOC_009914 (fpr1)


Basic Information

Item Value
gene id XLOC_009914
gene name fpr1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24971717 ~ 24974700 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00019781
GATGAGCTACAACGACCCAGTTGAACAAGGAGGGTTTGAAGGTACAATGATGGATCCATTCAATTTTACTGAGAGTCCCCCTAATCACAACTCATCAgaatatgatgatgattatgtTGATTACCAAAATTCAGAGCTCGGAAAATCTCTTAACATCATGTCACTCATAGTCTATAGTTTGGCTTTTGTACTTGGAGTGGTGGGAAACGGCATCGTGATTTGGGTTACTGGATTTAAAATGAAAAGGACAGTCAACACGGTCTGGTTTCTGAACCTCGCTGTCGCTGACTTTCTCTTCACTGCATTCCTCCCGCTCAGCGTGGCTTATACTGCCATGGGATTTCATTGGCCCTTTGGACAATTCATGTGTAAATTCAACAGCACTCTCGGTTTCCTCAACATGTTTGCCAGTGTGTACATCCTAGTCGTGATCAGTGTTGACCGCTGTGTGTCTGTGGTGCGTCCAATCTGGGCACAGAACCATCGGAATGTGGGCCGTGCATCTGCGGTGAGCTTTGGGGTTTGGTTGTTCGCTCTGTTGCTGAGCTCACCATACTTTGTCTTCAAGGACACTGCACAGGACAACAGGGACCCAAAAATAATCAACTGCTTCAACAACTTTGCTTTCTCTGATGCTGACACACAAGAGGTGGAGGACCTCCGTATGCTACGACATCGTGCCATGATCATTACCCGTTTCATCATAGGCTTTGTGGTGCCATTTGTGATCATCGTCTCCTGCTATGCAGTCATCATCCATCGTCTCCAAAGAAACCGTTCGATGTCTGGCAAAACTGGACGTCCTTTCAGGATCATAGCTGCAGTGATCACTGCCTTCTTCCTGTGTTGGGCTCCATACCATATCCTGGTGCTCATTGAGATGGTAAACCACATGAGTACTGAATACAGCCCCACCCTGCAACATGTCATCACTGTTGGAATTCCCATTGTGACCAGTTTGGCTTTCCTAAACAGCTGCCTGAACCCACTGTTGTATGTTTTCATGGGACAGGACTTTAAAGACAAAGTGCGCAAGTCAATCCTGAAGGTTTTGGAAACCGCTTTCACGGAAGAAGTTTCACGCACTAATACCTGGACAAATTCAATGACAACTATACGTAACAAAGAGAATGGGAGCAAGTCCTTCTCTGATGCAGAGGTATAACAACGTAACACACATGAATCACTTTTCTAAAGGAGGAATTTACAGAGTGACATGTGGATTAACCACTCGTCATAGATAAAATAAAGACATGCTAACCTGAACAAACTGGACCAGAAGATATTCTTTTAGTTTAAAACTTTACTTTAAAACCCTGCCTTGCCTTTACAGGGAAATGCTTAAGTGATGCAGagttattatatatttgtgtgtgcaaTGTGCATGTGTTTACCCACATAATATTTTGGAGACAGATTTGTTCCCAGAAGTGAGCTAAATCTGACAGAAACAGCCCAAACCTTCATTTtagaaaataatctttttttaaatgtataaaatgatgAATTATTTTATCATTACTGCTGTTGTTGTGGTTTGTAACAATACAGAAGGTTTTTCAGTTATAATTAGGTTATAGTATCTATAACAAGATGTATATAAAAATCACTAGAAGTAAAGAAgaacgtgtgagtgtgtgtgcttgtgtgtgtgcgagtggtGGTAAAGGTGTTAATAATATACCcatattttgacaaaaataaCATGGCATTGTTGGCAATGTAGACCATATTAGAATGAAGTTTTTCATATATTGTGCATGAGATccattgtagttttttttctatttcattaCTGTGTAACTGTTGCctgcatatattatttttcataatgcatattttattttatattaaacggtatcaagtttatttgtgtatttcaAAAACTAAGGAAAATGCTGAagctaaataaacaaactaa
>TCONS_00019782
ATGATGGATCCATTCAATTTTACTGAGAGTCCCCCTAATCACAACTCATCAgaatatgatgatgattatgtTGATTACCAAAATTCAGAGCTCGGAAAATCTCTTAACATCATGTCACTCATAGTCTATAGTTTGGCTTTTGTACTTGGAGTGGTGGGAAACGGCATCGTGATTTGGGTTACTGGATTTAAAATGAAAAGGACAGTCAACACGGTCTGGTTTCTGAACCTCGCTGTCGCTGACTTTCTCTTCACTGCATTCCTCCCGCTCAGCGTGGCTTATACTGCCATGGGATTTCATTGGCCCTTTGGACAATTCATGTGTAAATTCAACAGCACTCTCGGTTTCCTCAACATGTTTGCCAGTGTGTACATCCTAGTCGTGATCAGTGTTGACCGCTGTGTGTCTGTGGTGCGTCCAATCTGGGCACAGAACCATCGGAATGTGGGCCGTGCATCTGCGGTGAGCTTTGGGGTTTGGTTGTTCGCTCTGTTGCTGAGCTCACCATACTTTGTCTTCAAGGACACTGCACAGGACAACAGGGACCCAAAAATAATCAACTGCTTCAACAACTTTGCTTTCTCTGATGCTGACACACAAGAGGTGGAGGACCTCCGTATGCTACGACATCGTGCCATGATCATTACCCGTTTCATCATAGGCTTTGTGGTGCCATTTGTGATCATCGTCTCCTGCTATGCAGTCATCATCCATCGTCTCCAAAGAAACCGTTCGATGTCTGGCAAAACTGGACGTCCTTTCAGGATCATAGCTGCAGTGATCACTGCCTTCTTCCTGTGTTGGGCTCCATACCATATCCTGGTGCTCATTGAGATGGTAAACCACATGAGTACTGAATACAGCCCCACCCTGCAACATGTCATCACTGTTGGAATTCCCATTGTGACCAGTTTGGCTTTCCTAAACAGCTGCCTGAACCCACTGTTGTATGTTTTCATGGGACAGGACTTTAAAGACAAAGTGCGCAAGTCAATCCTGAAGGTTTTGGAAACCGCTTTCACGGAAGAAGTTTCACGCACTAATACCTGGACAAATTCAATGACAACTATACGTAACAAAGAGAATGGGAGCAAGTCCTTCTCTGATGCAGAGGTATAA

Function

symbol description
fpr1 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Acts upstream of or within neutrophil activation involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in spleen. Orthologous to human FPR1 (formyl peptide receptor 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0002283 neutrophil activation involved in immune response biological_process
GO:0006954 inflammatory response biological_process
GO:0002430 complement receptor mediated signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004875 complement receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04015 Rap1 signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04613 Neutrophil extracellular trap formation
ko05150 Staphylococcus aureus infection
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-121227-2 Predicted to enable G protein-coupled receptor activity and complement receptor activity. Acts upstream of or within neutrophil activation involved in immune response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in spleen. Orthologous to human FPR1 (formyl peptide receptor 1).

Ensembl:

ensembl_id ENSDARG00000042984

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00019781 False 1921 mRNA 0.40 2 24971717 24974700
TCONS_00019782 True 1119 mRNA 0.46 1 24972826 24973944

Neighbor

gene id symbol gene type direction distance location
XLOC_009913 BX539313.2 coding upstream 52760 24905556 ~ 24918957 (+)
XLOC_009912 dre-mir-125a-1 coding upstream 73464 24898171 ~ 24898253 (+)
XLOC_009910 NA coding upstream 74606 24834775 ~ 24897111 (+)
XLOC_009911 dre-let-7d-1 coding upstream 90499 24881122 ~ 24881218 (+)
XLOC_009909 si:dkey-79d12.4 coding upstream 230317 24733741 ~ 24741400 (+)
XLOC_009915 si:dkeyp-84f3.5 coding downstream 3503 24978203 ~ 24992830 (+)
XLOC_009916 znf1035 coding downstream 37294 25011994 ~ 25038855 (+)
XLOC_009917 im:7147486 coding downstream 92180 25066880 ~ 25072830 (+)
XLOC_009918 si:dkeyp-84f3.9 coding downstream 99329 25074029 ~ 25080476 (+)
XLOC_009919 si:ch211-261d7.3 coding downstream 120783 25095483 ~ 25104993 (+)
XLOC_009905 NA non-coding upstream 397916 24565734 ~ 24573801 (+)
XLOC_009929 NA non-coding downstream 232918 25207618 ~ 25213978 (+)
XLOC_009930 NA non-coding downstream 244735 25219435 ~ 25242310 (+)
XLOC_009931 NA non-coding downstream 259253 25233953 ~ 25235093 (+)
XLOC_009937 dre-mir-30d non-coding downstream 366716 25341416 ~ 25341543 (+)
XLOC_009938 dre-mir-30b non-coding downstream 367024 25341724 ~ 25341811 (+)

Expression


Co-expression Network