Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000055_04888583_04898249 |
| gene name | ALKBH3 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000055 |
| NCBI id | null |
| chromosome length | 6774723 |
| location | 4888583 ~ 4898368 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| alkbh3 | Predicted to enable dioxygenase activity. Predicted to act upstream of or within DNA dealkylation involved in DNA repair and oxidative single-stranded DNA demethylation. Predicted to be active in nucleus. Orthologous to human ALKBH3 (alkB homolog 3, alpha-ketoglutarate dependent dioxygenase). |
| id | name | namespace |
|---|---|---|
| GO:0006307 | DNA dealkylation involved in DNA repair | biological_process |
| id | description |
|---|---|
| K10860 | ALKBH3, DEPC1; mRNA N1-methyladenine demethylase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000055_04888583_04898249.mRNA | True | 1055 | mRNA | 0.49 | 11 | 4888583 | 4898368 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000055_04869576_04887020 | HSD17B12, HSD17B12A | coding | upstream | 624 | 4869483 ~ 4887959 (+) |
| CI01000055_04834611_04844496 | API5 | coding | upstream | 43281 | 4834611 ~ 4845302 (+) |
| CI01000055_04815417_04830336 | PRR5L | coding | upstream | 57676 | 4815246 ~ 4830907 (+) |
| CI01000055_04653437_04666121 | BRD1B | coding | upstream | 221536 | 4653382 ~ 4667047 (+) |
| CI01000055_04644727_04647551 | PIM3 | coding | upstream | 239978 | 4644130 ~ 4648605 (+) |
| CI01000055_04906688_04910244 | C14H11ORF96, CLG19H11ORF96, C6H11ORF96, CUNH11ORF96 | coding | downstream | 5592 | 4903960 ~ 4910978 (+) |
| CI01000055_04920053_04936147 | NA | coding | downstream | 20701 | 4919069 ~ 4936594 (+) |
| CI01000055_04948850_04952489 | NA | coding | downstream | 50256 | 4948624 ~ 4952634 (+) |
| CI01000055_05047161_05054848 | VAC14 | coding | downstream | 147863 | 5046159 ~ 5055449 (+) |
| CI01000055_05086576_05086973 | NA | coding | downstream | 187658 | 5086026 ~ 5087381 (+) |
| G240014 | NA | non-coding | upstream | 24746 | 4853797 ~ 4863837 (+) |
| G240020 | NA | non-coding | upstream | 87038 | 4801341 ~ 4801545 (+) |
| G240000 | NA | non-coding | upstream | 94578 | 4793787 ~ 4794005 (+) |
| G239998 | NA | non-coding | upstream | 97680 | 4790685 ~ 4790903 (+) |
| G239944 | NA | non-coding | upstream | 208508 | 4679812 ~ 4680075 (+) |
| G240004 | NA | non-coding | downstream | 39849 | 4938217 ~ 4970652 (+) |
| G240052 | NA | non-coding | downstream | 74800 | 4973168 ~ 4973408 (+) |
| G240055 | NA | non-coding | downstream | 94497 | 4992865 ~ 4993344 (+) |
| G240061 | NA | non-coding | downstream | 103240 | 5001608 ~ 5002128 (+) |
| G240062 | NA | non-coding | downstream | 103902 | 5002270 ~ 5003077 (+) |
| CI01000055_04265119_04272728 | NA | other | upstream | 615868 | 4265119 ~ 4273913 (+) |
| G239755 | NA | other | upstream | 633491 | 4254210 ~ 4255092 (+) |
| G239761 | NA | other | upstream | 675181 | 4162250 ~ 4213402 (+) |
| CI01000055_02542526_02542861 | NA | other | upstream | 2344465 | 2542216 ~ 2544118 (+) |
| G238534 | NA | other | upstream | 3219339 | 1668410 ~ 1669244 (+) |
| CI01000055_05163240_05166231 | PIGY, PYURF | other | downstream | 267124 | 5162990 ~ 5166647 (+) |
| G240099 | NA | other | downstream | 638150 | 5525472 ~ 5544153 (+) |
| CI01000055_05614889_05616453 | NA | other | downstream | 716010 | 5614065 ~ 5617591 (+) |
| CI01000055_06087070_06088629 | ETFRF1, LYRM5, LYRM5B | other | downstream | 1188457 | 6087034 ~ 6088759 (+) |
| G240344 | NA | other | downstream | 1265492 | 6163860 ~ 6164011 (+) |
