taf10 (taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678)


Basic Information

Item Value
gene id taf10
gene name taf10,LOC106572212,LOC107679390,LOC107711978,LOC107591795,LOC107550511,LOC107707678
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11906748 ~ 11910004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026914171.2
GAAACGTTAACGTAGCTTACTTCACACAACTTCCTCAAAAAGAcgctaacaaaacacaaaacaaaatccgGAGGGAGGATTAGCCCTGAATATACTGACTTCTGGTTTACTTGCAGTATACAAATTTACATTATTGGTTGCATTTATTGCATAAAACTCGCGCGTGGGACGAAATATCCGGTTATTAAAGCGTGATTTCGGTTGTTTTTGAGTCACTGCGCTGACATCATGAATGTGGAAGCTGCACAGGCGGCGCCGAGCGGAGCAACGAGCACCAACTCCTCAACCCCGAGCAGCACCAGCAACAACTGCGTCCCGAACAGCAACTCCGCCAACACTGTCAGCAGTTTACCTCCAACTGGCAGCACTAATGTTCCCACTTCAGCGGCCATGGCAACGCCATCATCCGACTCCTCTGTGTCCAACGGGCTCTACGTGCCCACGGGATTAGCCAACGGGGACGTGAAGCCCGTCATCTCAAGCACACCGCTGGCTGATTTCCTAATGCAGCTGGAAGACTACACACCCACAATCCCAGATGCGGTTACAGGATATTATCTCAATCGAGCAGGATTTGAAGCGTCGGATCCAAGGATAATCCGTCTGATCTCATTGGCGGCTCAGAAGTTTGTCTCGGACATTGCTAATGATGCACTGCAGCACTGTAAAATGAAGGGCACTGCGTCTGGAAGCTCCCGGAGCAAGACAAAGCAGGATAAGAAGTACACACTGACGATGGAAGACCTGACCCCAGCTTTATCTGAGTATGGCATCAACGTTAAAAAACCCTACTACTTCAcgtaaaaaaaacccaaaaaacctAACATCCTGAAACGAACTGCTGAAAGTAACATGGCTTCATAAAGAGGTGTCCACACTGTAGAGACATGACTTTTAACAGTGAAAACCTTTGGATCCTTGTGACACAGAGAAGGCTGTGTGCTGGCTTTTCCTTTATTTagcaatttattttatgtttttttgtttttgtgtaacCATGGATGTGATTCATTACACATTTGTAATATCGGATTAATGGGAATAAATAGAATTTGTCACTTC
>XM_026914180.2
AAACGTTAACGTAGCTTACTTCACACAACTTCCTCAAAAAGAcgctaacaaaacacaaaacaaaatccgGAGGGAGGATTAGCCCTGAATATACTGACTTCTGGTTTACTTGCAGTATACAAATTTACATTATTGGTTGCATTTATTGCATAAAACTCGCGCGTGGGACGAAATATCCGGTTATTAAAGCGTGATTTCGGTTGTTTTTGAGTCACTGCGCTGACATCATGAATGTGGAAGCTGCACAGGCGGCGCCGAGCGGAGCAACGAGCACCAACTCCTCAACCCCGAGCAGCACCAGCAACAACTGCGTCCCGAACAGCAACTCCGCCAACACTGTCAGCAGTTTACCTCCAACTGGCAGCACTAATGTTCCCACTTCAGCGGCCATGGCAACGCCATCATCCGACTCCTCTGTGTCCAACGGGCTCTACGTGCCCACGGGATTAGCCAACGGGGACGTGAAGCCCGTCATCTCAAGCACACCGCTGGCTGATTTCCTAATGCAGCTGGAAGACTACACACCCACAATCCCAGATGCGGTTACAGGATATTATCTCAATCGAGCAGGATTTGAAGCGTCGGATCCAAGGATAATCCGTCTGATCTCATTGGCGGCTCAGAAGTTTGTCTCGGACATTGCTAATGATGCACTGCAGCACTGTAAAATGAAGGGCACTGCGTCTGGAAGCTCCCGGAGCAAGACAAAGGATAAGAAGTACACACTGACGATGGAAGACCTGACCCCAGCTTTATCTGAGTATGGCATCAACGTTAAAAAACCCTACTACTTCAcgtaaaaaaaacccaaaaaacctAACATCCTGAAACGAACTGCTGAAAGTAACATGGCTTCATAAAGAGGTGTCCACACTGTAGAGACATGACTTTTAACAGTGAAAACCTTTGGATCCTTGTGACACAGAGAAGGCTGTGTGCTGGCTTTTCCTTTATTTagcaatttattttatgtttttttgtttttgtgtaacCATGGATGTGATTCATTACACATTTGTAATATCGGATTAATGGGAATAAATAGAATTTGTCACTTC

Function

symbol description
taf10 Predicted to enable promoter-specific chromatin binding activity. Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in histone acetylation and transcription initiation from RNA polymerase II promoter. Predicted to act upstream of or within DNA-templated transcription, initiation. Predicted to be located in nucleus. Predicted to be part of SAGA complex and transcription factor TFIID complex. Orthologous to human TAF10 (TATA-box binding protein associated factor 10).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 10-like isoform X1

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0006413 translational initiation biological_process
GO:0005634 nucleus cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03134 TAF10; transcription initiation factor TFIID subunit 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026914171.2 True 1062 mRNA 0.46 5 11906748 11910004
XM_026914180.2 False 1058 mRNA 0.45 5 11906749 11910004

Neighbor

gene id symbol gene type direction distance location
efhd2 efhd2,LOC107711975,LOC107591793 coding upstream 2491 11882246 ~ 11904257 (+)
LOC113530451 LOC108266054 coding upstream 30660 11861457 ~ 11876088 (+)
fhad1 LOC108266054 coding upstream 44868 11858468 ~ 11861880 (+)
LOC113530463 LOC108266055 coding upstream 49495 11854167 ~ 11857253 (+)
alas2 alas2,LOC108265738,LOC108441648,LOC107555603,LOC107745783,LOC107549233,LOC107731137 coding upstream 56761 11841583 ~ 11849987 (+)
suv39h1b suv39h1,suv39h1b,LOC108265881,LOC108442234,LOC107550505,LOC107679310,LOC107591797 coding downstream 37447 11947451 ~ 11957403 (+)
tspy LOC108265788 coding downstream 86039 11996043 ~ 12000770 (+)
sema3ga sema3ga,LOC108265594,LOC108442245,LOC107591802,LOC107550503,LOC107731285,LOC107669661 coding downstream 100069 12010073 ~ 12033492 (+)
stk38a stk38,LOC108265501 coding downstream 166507 12076511 ~ 12096739 (+)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding downstream 193216 12103220 ~ 12187629 (+)
G131061 NA non-coding upstream 188863 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 354717 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 547368 11355449 ~ 11359380 (+)
LOC113527270 NA non-coding upstream 958402 10944657 ~ 10948346 (+)
G130618 NA non-coding upstream 990123 10916337 ~ 10916625 (+)
G131279 NA non-coding downstream 307000 12217004 ~ 12217214 (+)
G131282 NA non-coding downstream 316148 12226152 ~ 12226362 (+)
LOC117597859 NA non-coding downstream 609890 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 780163 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 790708 12700712 ~ 12701501 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 192716 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 209957 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 272904 11622302 ~ 11633844 (+)
mrpl55 mrpl55 other upstream 1032622 10870119 ~ 10874126 (+)
abl2 abl2,LOC107657876,LOC107699422,LOC107599009,LOC107758002,LOC107707589,LOC107603207 other upstream 1165323 10706719 ~ 10741425 (+)
foxp3a LOC108265789 other downstream 69182 11979186 ~ 11995852 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other downstream 286589 12196593 ~ 12230001 (+)
rbm15 rbm15,LOC107731203 other downstream 689694 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1795162 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1980400 13890404 ~ 13948808 (+)

Expression


Co-expression Network