G125510 (pofut2)


Basic Information

Item Value
gene id G125510
gene name pofut2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 116111 ~ 117302 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157299
CTTTCACTGCCCTCCACTGTCCCCTCAGGCCCTGCCTTACCGGCGAGGAACTGTTCGTACTCGATGACGGGGATGTTGGCGCCCAGGCTGTCCACGGTGAAGAAGTCAGCCCAGGGGATGCGCACCTGGTGGATGTCGGGGCTCTGCCAGTGGTAGAGGCGGCCCCAGGGCGGCAGCACCAACACCCAGCCGCCCTGCGCCCGCAGCAGGGTCTTCAGCAGCGACGCCATGCGGATAAACACGTCCCTCCGCAGGTTGAAGCCCTCGGGGGGGTTCACGTCGTACAGCAGTCCAGGCTGAACTGCTTAAACATCCCGTCCGCTGTCCGTCTCTGGACCGGAGGCCCCCGTACCGTGTGTCCCGGGCTGCCGAGGCGCTGAAGACGGACTGGCCGGCACTGAAGGCTCCATCTTCGGCCGTGACTTGAGCAGCGACCGCCGGCCAGTAGAGCAGAGCCACGCACAGTGCGAGCCGAGGCCGCCCGCACAGGCACCGCGCAGCCTCCGCCATGATGCCCAGCCACGCACTTCCCCACCCGTCCCAGCAGGCACCGCGCTCAGCACCCGGCAGCGGCTCACTCTGATTGGCCAAGAGGAACTGCGTTGCGATTGGCTGTCATTCCCGCCCTGCTATTGGCTGCTGAATCtgcttctgttttaaatgtgttcggTGATTCTG

Function

symbol description
pofut2 Predicted to enable peptide-O-fucosyltransferase activity. Predicted to act upstream of or within fucose metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human POFUT2 (protein O-fucosyltransferase 2).

NR:

description
PREDICTED: GDP-fucose protein O-fucosyltransferase 2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157299 True 678 lncRNA 0.65 2 116111 117302

Neighbor

gene id symbol gene type direction distance location
AMCG00000681 NA coding upstream 75515 38752 ~ 40596 (+)
AMCG00000680 NA coding upstream 89830 21907 ~ 26281 (+)
AMCG00000683 unc80 coding downstream 20803 138105 ~ 143895 (+)
AMCG00000694 NA coding downstream 250274 367576 ~ 414428 (+)
AMCG00000695 cps1 coding downstream 297142 414444 ~ 414795 (+)
AMCG00000702 vwc2l coding downstream 994579 1111881 ~ 1133185 (+)
AMCG00000705 NA coding downstream 1109015 1226317 ~ 1233934 (+)
G125485 NA non-coding upstream 23491 92283 ~ 92620 (+)
G125484 NA non-coding upstream 24826 91043 ~ 91285 (+)
G125516 NA non-coding downstream 11557 128859 ~ 129127 (+)
G125565 NA non-coding downstream 237186 354488 ~ 355729 (+)
G125597 NA non-coding downstream 339200 456502 ~ 487203 (+)
G125605 erbb4,LOC107555909,LOC107741926,LOC107662043,LOC107721020,LOC107660610 non-coding downstream 412597 529899 ~ 531912 (+)
G125612 NA non-coding downstream 457988 575290 ~ 575492 (+)
G125561 NA other downstream 222338 339640 ~ 403591 (+)
AMCG00000723 crygs,LOC107756035,LOC107663530,LOC105911960,LOC103033891 other downstream 1482394 1599696 ~ 1606031 (+)
AMCG00000729 satb2,LOC107690605,LOC107569722 other downstream 1551543 1668845 ~ 1698573 (+)
AMCG00000734 NA other downstream 1688105 1805407 ~ 1814157 (+)
AMCG00000848 NA other downstream 5343999 5461301 ~ 5465981 (+)

Expression


Co-expression Network