RNA id: TU157299


Basic Information

Item Value
RNA id TU157299
length 678
lncRNA type inter_gene
GC content 0.65
exon number 2
gene id G125510
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 116111 ~ 117302 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTCACTGCCCTCCACTGTCCCCTCAGGCCCTGCCTTACCGGCGAGGAACTGTTCGTACTCGATGACGGGGATGTTGGCGCCCAGGCTGTCCACGGTGAAGAAGTCAGCCCAGGGGATGCGCACCTGGTGGATGTCGGGGCTCTGCCAGTGGTAGAGGCGGCCCCAGGGCGGCAGCACCAACACCCAGCCGCCCTGCGCCCGCAGCAGGGTCTTCAGCAGCGACGCCATGCGGATAAACACGTCCCTCCGCAGGTTGAAGCCCTCGGGGGGGTTCACGTCGTACAGCAGTCCAGGCTGAACTGCTTAAACATCCCGTCCGCTGTCCGTCTCTGGACCGGAGGCCCCCGTACCGTGTGTCCCGGGCTGCCGAGGCGCTGAAGACGGACTGGCCGGCACTGAAGGCTCCATCTTCGGCCGTGACTTGAGCAGCGACCGCCGGCCAGTAGAGCAGAGCCACGCACAGTGCGAGCCGAGGCCGCCCGCACAGGCACCGCGCAGCCTCCGCCATGATGCCCAGCCACGCACTTCCCCACCCGTCCCAGCAGGCACCGCGCTCAGCACCCGGCAGCGGCTCACTCTGATTGGCCAAGAGGAACTGCGTTGCGATTGGCTGTCATTCCCGCCCTGCTATTGGCTGCTGAATCtgcttctgttttaaatgtgttcggTGATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157269 lncRNA upstream 23491 92283 ~ 92620 (+) True G125485
TU157268 lncRNA upstream 24826 91043 ~ 91285 (+) True G125484
TU157309 lncRNA downstream 11557 128859 ~ 129127 (+) True G125516
TU157379 lncRNA downstream 222338 339640 ~ 341771 (+) True G125561
TU157380 lncRNA downstream 222338 339640 ~ 403591 (+) False G125561
TU157384 lncRNA downstream 237186 354488 ~ 355729 (+) True G125565
TU157423 lncRNA downstream 339200 456502 ~ 487203 (+) True G125597
AMCG00000681 mRNA upstream 75515 38752 ~ 40596 (+) True AMCG00000681
AMCG00000680 mRNA upstream 89830 21907 ~ 26281 (+) True AMCG00000680
AMCG00000683 mRNA downstream 20803 138105 ~ 143895 (+) True AMCG00000683
AMCG00000694 mRNA downstream 250274 367576 ~ 414428 (+) True AMCG00000694
AMCG00000695 mRNA downstream 297142 414444 ~ 414795 (+) True AMCG00000695
AMCG00000702 mRNA downstream 994579 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 1109015 1226317 ~ 1233934 (+) True AMCG00000705
TU157377 other downstream 222338 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1482394 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1551543 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8499897 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 10030555 10147857 ~ 10154187 (+) False AMCG00000949

Expression Profile