RNA id: AMCG00000694


Basic Information

Item Value
RNA id AMCG00000694
length 4458
RNA type mRNA
GC content 0.63
exon number 37
gene id AMCG00000694
representative True

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 367576 ~ 414428 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAAAGATCCTGACAGTGCGAGAGTTGGTGCGGGGCTTCAGGTCAGGGCTGTCCGTCTGCTGCAGCCGGAGTGGACGTGGCTGGAGAGACGCCGGGACACGACTTCTGAGCATGAAGatTGGGAGACACGGCAGCAGTTATTTCTGCGCCGTGGTGTGTTACCCGGTGACCTGGAGTGACCCCGGCCTTGCGCTGCGCTGCAGGAACAAGGGAAGAGTCTGGCTCAGCGATCAGGGCAGGAGTGGGGCGGTTCGAGCTGTCTGGGGCGTGGCTGCGTGGGAAGCCCTGAGGGGAAGAGCGTCCCAGTGGGTGGTGACGATGCTGATCGATTCACTGCGTAAGTGCCTGATTGGCTCGGCCTGCTGCTCAGCGGCTCGGCCCAGCATGGAGACGGTGGCATCACAGAGAGACCCCTGCGGctgcctcctctcctcccctgtcatcccctctcctctcccctccgcCCTGCAGGCACAGTCTGCACACCTGGTTCTGGACGACGGGACTCGGATGAAGGGCTTCTCATTCGGACATTCGCGGTCGTCGACGGGGGAGCTGGTGTTCAACACTGGGCTGGTGGGGTACCCCGAAGCCCTGACAGACCCCAGCTACAGGGGGCAGATTCTCACCCTCACCTACCCCATCGTGGGCAACTATGGCGTGCCCGACACCCAAGAGCTGGACAGCCTGGGTCTCAGGACCAACGTAGAGTCTGATCGCATCCAGgtgtCAGGGTTGCTGGTGCAGGACTACAGCCACGACTACAGTCACTGGAAGTCAGTGAAGAGTCTGGCGCAGTGGCTGCAAGAGGAGAAGGTCCCGGCCCTGTATGGAGTCGACACCCGGATGCTGACCAAAATCATCAGAGACAAGGGCACAGTTTTGGGGAAGATTGAGTTTGACGAGCAGTCCGTCGAGATCTACGACCCGAATCAGCGCAATCTGGTGGCGGACGTGTCCACGAAGGAGGTGCGTGTGTTCGGGAAGGGGAATCCCATTAAAATAGTGGCAGTGGATTGTGGGATCAAGCACAACATCATCCGTCTTCTTGTGAAGCGCGGCGCGGAGGTGCACTTGGTGCCGTGGGACCAGGACCTGCTGGGGCTGCAGTATGACGGACTGTTCATCTCTAATGGCCCTGGGGACCCTGCACTGGCCACCACACTCGTCCAGAACCTCCGCAAGGTGCTGGAGAGCGACCGTCGGGAGCCGGTGTTTGGTATCTGCATGGGCAACCAGATCACGGCACTGGCGGCCGGTGCCAAGTCCTACAAGCTGCCCATGGGGAACAGagGTCAGAACCAGCCAGTGTTGAACCTGCTGACGGGCCAGGCCTTCATAACGGCGCAGAACCACGGCTACGGCATCGACAGCCAGTCCCTCCCGCCCGGCTGGAGCCCACTGTTCGTCAACGCCAACGATGGCACCAACGAGGTGTCCAAGGTGCTGGTGCTCGGCTCCGGTGGACTGTCCATCGGCCAGGCCGGGGAGTTCGATTACTCCGGTTCTCAGGCCATCAAAGCCATGAAGGAAGAGAATGTGAAGACGGTGCTGATGAACCCCAACATTGCCTCGGTGCAGACCAATGAGCTTGGCAGCAAGCAGGCCGACTCAGTGTACTTCCTCCCTGTCACGCCGCACTTTGTGTCCGAGGTGATCCGCACCGAGCGGCCCGACGGCATCCTGCTGTCCATGGGCGGCCAGACGGCGCTGAACTGCGGTGTGGAGCTGTGTAAGAGCCCTGTGCTGATGTGTACGGTGTGTTCTCTCACAGGCGTGGAGCTGTATCAGAGCGGGGTGCTGCAGCGCTTCGGGGTGCAGGTCCTGGGCACGCCTGTGGAATCCATCATGGCCACCGAGGACCGGCAGCTCTTCTCTGACCGGCTGACGGAGATCGGCGAGAAGATCGCCCCCAGCATCGCCGTGGACACAGTGTCCGACGCCCTGCAGGCCGCTGAGCGGATCGGGTACCCGGTGATGCTGCGCTCTGCCTACGCCCTGGGGGGGCTGGGGTCGGGGCTGTGCGTGGACAGGGACCAGCTGCGGGAAACGGCCAGGAAGATCCTGGTGGAGAAGTCTCTGATGGGCTGGAAGGAGGTGGAGTACGAGGTGGTGAGGGACGTGGCGGACAACTGCGTGACCGTGTGCAACATGGAGAACTTTGACCCCCTGGGCATTCACACAGGCGACTCCATCGTGGTGGCGCCGAGCCAGACGCTGTCCAACGAGGAGTACCACCTGCTGCGTGAGACGGCCATCAAGGTGGTGCGGCACCTGGGCATCGTGGGCGAGTGCAACATCCAGTACGCGCTGCACCCTGGCTCGTTGGAGTACTGCATCATTGAGGTCAACGCCCGGCTCTCGCGCAGCTCCGCCCTCGCCTCCAAGGCCACGGGCTACCCCCTGGCGTTTGTGGCTGCCAAGCTGGCACTGGGCATCCCGTTGCCGGAGATCAGAAACGCGGTGTCGGAGAAGACCACGGCCTGCTTCGAGCCCAGCCTGGACTACATCGTCACCAAGGTCCCGCGCTGGGACCTGGACCGCTTCCAGGGCATGACCCGGGAGATCGGCAGTGCCATGAAGAGTGTGGGCGAGgtgaTGGCAGTGGGGCGCACTTTCGAGGAGAGTATCCAGAAGGCTCTGCGGATGTGCCACCCCTCTGTGAATGGGTTCGAGCCCCAGCTGCCCATGAACGAGGCCTGGGCAGAGCCTCCCGACCTGCAGCAGAACCTGGCTGTGCCCTCCAGCACACGTATCTTCTCTCTGGCAAAGTGGTTTCTGCACAAACTGCGGCGCATCACGGAGATGGAGAAACACCTGGGCCAGTACAGCAGCTCCACGGTGCCGCAGACGCTGCTGCTGAAGGCCAAGCAGGACGGCTTCTCGGACCGGCAGGTAGGCGCGGCGTTGCACCTGGAGGAGACGGAGGCCAGGGAGCTCCGGCTGAGACAAGGCATCAGACCCTGGGTCAAACAGATCGACACCCTCGCTGCAGAGTACCCTGCTGTCACCAACTACCTGTACTGCACCTACCATGGCCAgGAGCACGACATCGACTTCAGGGACCAGGGTGTGATGGTGCTCGGCTGTGGACCGTACCACATCGGCAGCAGCGTGGAGTTCGACTGGTGTGCCGTGTCGTGTATCCGGGCCCTGCGGCGGCTGGGCCGGCGCACCGTGGTGGTGAACCACAACCCCGAGACGGTCAGCACGGACTTCGACGAGTGCGACCGGCTGTACTTCGAGGAGCTGACGCTGGAGCGCGTGCTGGACGTGGTGCAGCAGGAGggcTGCAGCGGGAGCATCATCTCGGTGGGGGGGCAGATCCCTAATAACCTGGCCATACCGCTGCACCAGTGTGGCGTGTCCATCCTGGGCACCAGCCCCCTGCAGATCCACCGGGCCGAGGAGCGCTCTGTCTTCTCCACCATACTGGACCAGCTGGGCGTGGCGCAGGCGCCCTGGAGAGCCCTGAGCTCGCTGGAAGACGCCATCGCCTTCACCAGTCAAGTGGGCTACCCCTGCCTGCTGAGACCCTCCTACGTGCTGAGtgGCTCGGCGATGAACGTGGTCTATGGGCAGCAGGAGATGAAGAGGTTTCTGGAGGAGGCGACCCGGGTGTCTCAGGAGCACCCTGTGGTCATCACCAAGTTCATCGAGGGAGCCAGGGAGGTGGAGGTCGACGCCGTGGCCAAGCAGGGAAAGCGGCAGCACAGAGACGCTGGTATCTCCTCGGGGGTGAAGACTCAGACCTGCCTGCCGGGGTCTGGCGCTCCTCTCGGGGTCCTGGCCCACGCCATCACGGAGCACGTGGAGGATGCCGGGGTCCACTCCGGGGACGCCACGCTCATGCTGCCCACCCAGAACATCAGCCAGGGGgccctggagaagGTGAAGATTGCGACGAGGAAGATCGCCCAGGCGTTCGACATCTCGGGCCCCTTCAACACGCAGTTCCTCGTGAAGGGCAACGACGTCATGGTGATCGAGTGTAACCTGCGCGCCTCGCGCTCCTTCCCCTTTGTGTCCAAGACGCTGGGCGTGGACTTCATTGACGTGGCCACCAGGGTCATGGTGGGGGAGAACATTGACCAGAGCCGGCTGCCCACGCTGGACAACCCCATCATACCGGTGGACTACGTGGGCATTAAGGCCCCCATGTTCTCCTGGCCGCGCCTGAGGGACGCCGACCCCGTGCTGCGCTGCGAGATGGCGTCGACCGGAGAGGTGGCCTGCTTTGGGTCCGATATCTACTCGGCGTTCCTGAAGGCCATGCTGTCCACGGGCTTCAAGCTCCCTCAGAAGGGGATCCTCGTCGGGATTCAGCATTCCTTCCGACCAAAGTTCTTGGCCGCGGCACACCAGCTGAATAAGGAAGGCTTCAAGCTGTACGCCACCGAGGGCACCTCTGCCTGGCTCAACGCCAACGACGTGCCCGCCATCCCGGTGTCTTAA

Function

GO: NA

KEGG:

id description
K01948 CPS1; carbamoyl-phosphate synthase (ammonia)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157384 lncRNA upstream 11847 354488 ~ 355729 (+) True G125565
TU157379 lncRNA upstream 25805 339640 ~ 341771 (+) True G125561
TU157309 lncRNA upstream 238449 128859 ~ 129127 (+) True G125516
TU157299 lncRNA upstream 250274 116111 ~ 117302 (+) True G125510
TU157269 lncRNA upstream 274956 92283 ~ 92620 (+) True G125485
TU157423 lncRNA downstream 42074 456502 ~ 487203 (+) True G125597
TU157432 lncRNA downstream 115471 529899 ~ 531912 (+) True G125605
TU157439 lncRNA downstream 160862 575290 ~ 575492 (+) True G125612
TU157440 lncRNA downstream 182359 596787 ~ 597135 (+) True G125613
TU157522 lncRNA downstream 889667 1304095 ~ 1307335 (+) True G125684
AMCG00000683 mRNA upstream 223681 138105 ~ 143895 (+) True AMCG00000683
AMCG00000681 mRNA upstream 326980 38752 ~ 40596 (+) True AMCG00000681
AMCG00000680 mRNA upstream 341295 21907 ~ 26281 (+) True AMCG00000680
AMCG00000695 mRNA downstream 16 414444 ~ 414795 (+) True AMCG00000695
AMCG00000702 mRNA downstream 697453 1111881 ~ 1133185 (+) True AMCG00000702
AMCG00000705 mRNA downstream 811889 1226317 ~ 1233934 (+) True AMCG00000705
AMCG00000708 mRNA downstream 834313 1248741 ~ 1249425 (+) True AMCG00000708
AMCG00000704 mRNA downstream 842353 1256781 ~ 1272965 (+) True AMCG00000704
TU157377 other upstream 25805 339640 ~ 341771 (+) False G125561
TU157655 other downstream 1185268 1599696 ~ 1600639 (+) False AMCG00000723
TU157662 other downstream 1254417 1668845 ~ 1696247 (+) True AMCG00000729
TU159397 other downstream 8202771 8617199 ~ 8620195 (+) True G127134
TU159756 other downstream 9733429 10147857 ~ 10154187 (+) False AMCG00000949
TU160309 other downstream 11585236 11999664 ~ 12011425 (+) True AMCG00001002

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073503 True 4497 mRNA 0.51 39 NC_007120.7 39027312 ~ 39138504 (+)