AMCG00021071 (tcp1,LOC107549176)


Basic Information

Item Value
gene id AMCG00021071
gene name tcp1,LOC107549176
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2041824 ~ 2048003 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021071
TGCGTATCTCTCTGCGTCTGCGGGCTTTCAGCGCTATCGAGCATCTAAACCGACccaaaatgtctatttttgactCGGGGCTACTGAGTGTCATGGGCCAGAGGTCTACCGGAGCATCGGTGCGGACCCAAAACGTCATGGCCGTGTCGTCCATCGCCAACATCGTGAAGAGCTCCCTGGGCCCGGTGGGGCTGGACAAGATGCTGGTTGACGATATTGGGGACATCACCATTACCAATGACGGGGCCACGATCTTGAAGCTGCTCGAGGTGGAGCACCCTGCTGCCAAGGTGCTGTGTGAGCTGGCGCAGCTGCAGGACCGTGAGGTCGGGGATGGGACGACATCCGTGgtaatACTGGCTGCAGAGCTGCTGAGGAACGCAGACGAGCTGGTGTCGCAGAAGATCCACCCCACGAGTGTCATCAGCGGCTACCGCTTGGCTTGCAGAGAAGCGGTCCGATTTATCAACGAAAACCTGACCATCAACACCGATGAGCTGGGAAGGGAGTGTCTCGTGAACGCCGCCAAGACCTCCATGTCCTCAAAGATTATTGGTACTGACTCAGACTTCTTTGCCAATATGGTGGTGGATGCCGTCATGGCGGTGAAATTCACCGATGCCAAGGGACTGGCGCACTACCCCGTCACCTCGGTCAATGTGCTGAAGGCCCACGGGGGCAGCCAGAGGGACAGCCTCCTGGTGAACGGCTATGCCATCAACTGCACTGTGGCCTCGCAAGCCATGCCCAAGAAAATCACCAATGCCAAGATTGCCTGTCTGGACTTCAGTCTGCAGAAGACCAAGATGAAGATGGGAGTACAGGTGATCATTTCTGACCCAGACAAGCTGGCACAGATTCGCCAAAGAGAGATTGACATCACAAAAGAGCGTGTTCAGAAGATCCTGGGGTCTGGGGCGAATGTCATCCTCACCACAGGGGGCATTGATGACATCTGCCTCAAATACTTCCTGGACGCTGGAGCCATGGCAGTCAGACGTGTACTGAAGCAGGACCTCCGGAGAATCGCCAAGGCCTCAGGCGCCACGGTGTGCTCCTCGCTGGTGAATCTGGAAGGAGAGGAGGCCTTTGACGTCTCCCTGCTGGGCCACGCGGAGGAAGTGCTGCAGGACTGGATCTGTGATGACGAACTCATCCTAATCAAGAGGTCAGTCCCGGCCCAGTTGTCTGCATCCTTGCAGTGGGATAAGTCTCCTAGTCGCTGCTTCTCCCACCACTGGACATTTCTCTCCGTCTCCAGCACCAAGGCGCGCACAGCCGCCTCCCTGATCCTGCGCGGGGCCAACGACTTCATGTGCGACGAGATGGAGCGCTCCGTGCACGACGCCCTGTGCGTGGTTAAGCGGGTCCTGGAGTCCAAGTCGCTGGTGGCCGGAGGGGGAGCAGTGGAGGCCGCACTGAGCATCTACCTGGAGAACTTCGCCACCACGATGGGCTCCAGAGAGCAGCTGGCCATCGCGGAGTTTGCCCACTCTCTACTCATCATCCCCAAGATCCTGGCGGTGAACGCAGCCCAGGACTCCATCGACCTGGTGGCCAAGCTGCGGGCTTTCCACAACCAGGCCCAGATCAACCCCGACCACAAGCACTTCAAATGGCAAGTGGCGCGTTGGCAGGAAGGCTGTCGTGTGTTTGTGCAATGGATCGGTCTAGACCTCGTGAACGGCAAACCCAGAGACAACAAGCAGGCCGGGGTGTTCGAGCCCACCATGGTGAAGACCAAGAGCATCAAGTTCGCCACCGAAGCCGCCATCACCATCCTGCGTATCGACGACCTCATCCGGATCATCCCCGACGAGAAGGAAGGTGGCGGCAGATCGTACCAAGACGCCGTGGCGGGGGGGGAACTAGACGACTGATTAGCAAACCGACCATGTGAAGTGGCTGCTGGCTCGACGCCCTCATCTCGTTcagcactttttcttttccccctgaAGAGGTTGCACAGACTGGTGCTTAAAATTGTCCCATGTTGCTTGGCAGTGTATGGTCTAATTAATAAAGTATACCCTTGGTGTCGTCTGAACGTAGCCATCGTTAAATGCTCGTTTGCTCGAACGCGGTGTTCTTTAATTCCGTGAACTTGTGGAAAAAGATGTGCCTTGCCTTCAAAGGCATTTGTTTGCTGTGATTTTGCACAAAATGTGTGTAGTGGATGTCCTGGCTTAGTTGAATTACATTGCCTAGATGGGTTTGTGGTCTTTAAAGGTAAATGTAACTGAACAATGACCATTCTTTCCACTTGTACCCCTGATCTAAAAACACTGTGGGCTTGAGTCCCTAGCAAAGCACTTTGTAGCATAAATGCATATGAGTTCAATAAAGTGATATATTTCAGTAACACTTACCCTTTTTCTAAAAGGTGTGCATTTTTGGTTTTAGACCATAATTTT

Function

symbol description
tcp1 Predicted to enable unfolded protein binding activity. Acts upstream of or within Kupffer's vesicle development. Predicted to be part of chaperonin-containing T-complex. Orthologous to human TCP1 (t-complex 1).

NR:

description
PREDICTED: T-complex protein 1 subunit alpha-like

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K09493 CCT1, TCP1; T-complex protein 1 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021071 True 2414 mRNA 0.54 12 2041824 2048003

Neighbor

gene id symbol gene type direction distance location
AMCG00021062 NA coding upstream 68750 1965812 ~ 1973074 (+)
AMCG00021058 NA coding upstream 302818 1709333 ~ 1739006 (+)
AMCG00021052 NA coding upstream 989642 1045175 ~ 1052182 (+)
AMCG00021050 stag2,LOC107561283,LOC107600152 coding upstream 1143944 879806 ~ 897880 (+)
AMCG00021047 NA coding upstream 1185354 849545 ~ 856470 (+)
AMCG00021070 zc3h12b,LOC106567790,LOC106603314 coding downstream 29421 2077424 ~ 2081654 (+)
AMCG00021074 msn,msna,moes,LOC106567791 coding downstream 66428 2114431 ~ 2145920 (+)
AMCG00021073 NA coding downstream 103165 2151168 ~ 2156894 (+)
AMCG00021081 NA coding downstream 200986 2248989 ~ 2277428 (+)
AMCG00021080 NA coding downstream 301676 2349679 ~ 2353070 (+)
G83221 NA non-coding upstream 695053 1346451 ~ 1346771 (+)
G83153 NA non-coding upstream 1259168 777159 ~ 782656 (+)
G83114 NA non-coding upstream 1755692 285921 ~ 286132 (+)
G83086 NA non-coding upstream 1796505 243756 ~ 245319 (+)
G83325 NA non-coding downstream 35111 2083114 ~ 2083451 (+)
G83338 NA non-coding downstream 57179 2105182 ~ 2106906 (+)
G83374 NA non-coding downstream 153291 2201294 ~ 2201559 (+)
G83397 NA non-coding downstream 230793 2278796 ~ 2293041 (+)
G83427 NA non-coding downstream 468256 2516259 ~ 2516915 (+)
AMCG00021063 NA other upstream 122458 1917488 ~ 1919366 (+)
AMCG00021049 NA other upstream 1115349 918006 ~ 926475 (+)
AMCG00021076 NA other downstream 161479 2209482 ~ 2230147 (+)
G83624 NA other downstream 1749838 3797841 ~ 3798783 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other downstream 2079067 4127070 ~ 4129373 (+)
AMCG00021114 NA other downstream 2154708 4202711 ~ 4233797 (+)
AMCG00021133 NA other downstream 4496231 6544234 ~ 6546601 (+)

Expression


Co-expression Network