AMCG00021131


Basic Information

Item Value
gene id AMCG00021131
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6549111 ~ 6572385 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021131
GTCGGAGCAGTGCAAGTCTTCAGTGCGTTTGGAAAAGCAGGCGCACGGCTCGGTTCGTAATAGAGGATGGCTTTACTGACACTTGCTCACAACTAAATTAGAGCCAAAGTAGCCTGGATGCAAAAGCCTCCCTCTAGTTCACATCAGCCAGGTCTGAAAGGGGGCTGTCAGGCAATGGGCAGCTCGGTGCTGCGGGATAAGCCCTGGAGGAGAGCGCCGCGCCGCCTGGCAGGCAGGAGACCGCGACACAGCAGCGCGTCTTCCGACACGGTCCTGCTCGCCACCTCCTCTCGCATGTTTCACTGATTACCGGCTGGAAAGCAACGACAGCGATTGCAAACTGTCAAAATGGGCTTCAGTTAACTATAGAAACATCACAACTTTTCGTAGACGGAACATTTGGAGGAAAGCAGAAGGGATTCAAAACTGACAGCTCGCACAGTGAAGATGGCTCTAAAGGGTGCTGTGAGCTCCATCACAGTCCGTGTGGAGGGGATGACCTGCAACTCCTGTGTGCAGAGCATCGAGCAGCGGATTGGCGCCCTACCAGGGGTCTATAGCATTATGGTCTCTCTTGAGCTGAAGAAGGCCAACCTTGTGTTTCACTCCAGTTTGCAGAGCCCAGAGTCCCTGAGAGAGGCCATAGATGACATGGGGTTTGAAGCCAGTCTCCCGGAGTTGGCCACAGCATTTCCAGTTACAACGGAAACTGAGTTTTTCTCAATTCCCCATGTGCCTGCCGAATCCCAAGAGCAGGCCCAGAGCACACTATCCCAGTTAAAGGGCATTGTAGAGGCTCGGGCGGCTCCTGAGCAGAATGGTTTCTCCGTGACATTCATACCCTCCATTATAAGCGCCAGTCAAATAGCCGAGGCAGTGCAGAGCCTGGCTTTGGAAAGGAAGCCTGCCTCCCTGGAAAATCCCGTGAGAAACCAGGCCAGCGCGGTCATGGTGAAGATAAGGATCGAGGGAATGGTCTGTCTGTCGTGCACCACCACTATTGAAGGGAAGATAGGGAAACTCAATGGGATCCAGAAGATTAAAGtttCCTTGGATTCCCAGGAAGCAGTTGTACTGTATCAGCCCCACCTCATCTCGGCGGATGACATTGTGAACCAAATAGCCTGGGCCGGCTTCAAAGCCTTTGTCAAAAGCAAACCCCGTTCCCTCAAACTGTCCACCAGTGAGGTGGAACGCCTCATTAACACTCTAGCCCCAAACCACACTCCTGCAGCCGGGACGAGCTCACAAGAAGATGAGGAGGAGACGGTGACGGCGGTGTTACATGTGACAGGGATGCACTGCAACTCCTGTGTCGTCAACATCCAGGGCAATGTAGCCAAGCTGAGGGGGGTGCAGGCCGTCGAGGTCTCCCTGCAGGAGGAGAGCGCTTCTATTCACTATAACCCCAAACTCACTACTGTGAATCAACTCAAGAGTGCCATAGAGGCTCTCCCCCCTGGAAACTTTAAGGTGCGGATTGGGACTAACAGTCCTTCTGCGTGCGTGTCCGTGCTAACCCCGGTGACCCATGCCGACCAGCCGCTTGTATCAGTGACCATTATCGGGATCGAGGGCATGACCTGTGGCTCTTGCGTGCAGTCCATTGAAGGGGTGCTGtctcagagagagggagtgaagtCGGCCGTGGTATCCTTAGCCAAACACAGTGGGACATTTGAGTATGACCCATTGCTGACCAGCCCAGAGGAGTTACAGAGAGCCGTAGAGGACATGGGATTTGATGCCTTTCTCCCAGAAACCAATTCACTGGTGGAGCTCTTGGATCCCATCAGAGAAGCTCCTCCAGGGCCAATCAGGGAAGGAGACAAGGACTTGGTGCCAACACAGGATGCGAAAGTGGGGATACCAAGCCCCATGAAATGCTTCATTCAGATCAGTGGCATGACCTGTGCTTCCTGCGTGGCCAACATTGAGAGGAATCTCAAAAATGAGGATGGAATCTGTTCAGTGCTGGTAGCCTTGATGGCAGGCAAAGCAGAAGTGCGGTATGACCCAGCAGTCACCGATCCCTCCAGCATCGCAGAGCTGATCAAAGagctgggcttcaaggcatccGTTATCGAGAACTATGACGGGTCGGACGGCAGCCTCGAGCTTATTGTTAGAGGAATGACCTGTGCTTCCTGCGTCCACAAAATTGAGTCGACTTTAATGAAAACTAAGGGAATAGATTACGCGTCCGTTTCACTTGCCACCAACAAAGCCCACATCAAATATGACCCGGAAGTGACCGGACCACGTGATGTCATCAAATTGATTGAGAACATGGGATTTGAGGCTTCTTTAGTGAAGAAGGACCAATCAGCAAGTCACCTAGACCACAGTCGAGAAATAAGACAATGGAGGAAGTCCTTCTTTATCAGTCTAATATTTTGTGTTCCCGTCATGGGAATGATGATCTACATGATAGTAGTTGACCATCAGATCCAAAGTGACAATCACCACAATGCCAGCACGACAGAAATGGAGCATGTTCACTCCTCCATGTTACTGGAGAAGCAGGTTCTACCCGGTCTCTCCCTCATGAATTTAATATCCTTCCTTTTCTGTATACCCGTACAGAGTAAAACCTCAGAAGCCTTATCAAAGCTGATGTCCTTGCAGGCTACAGAAGCCACTGTTGTCACACTTGGCAGTGACATGTCTGTAATCAGTGAGGAGCAGATTGATGTTGAACTGGTGCAGCGTGGAGACATTGTGAAGGTGGTCCCAGGCGGTAAATTCCCTGTGGATGGACGAGTGATTGAAGGACATTCCATGACAGATGAGTCTCTTATTACAGGGGAAGCAATGCCAGTGACCAAAAAGCCAGGCAGCTCTGTGATCGCCGGGTCCATCAACCAGAATGGCTCCCTGCTCATCACGGCCACACACGTCGGAGCCGACACCACCCTGTCCCAGATCGTCAAGCTGGTGGAAGAGGCTCAGACCTCCAAGGCTCCTATTCAGCAATTCGCAGACAAGATCAGTGGATATTTCGTTCCATTTATTGTTGGAGTCTCGGTCCTCACCCTGATTGCCTGGATTGTGATTGGATTTCTAAACTTTGAGCTGGTAGAGAAATACTTTCCAGGCTACAACAAAAGCATCTCTCGCTCTGAGGTTGTGATCAGATTTGCTTTCCAGGCCTCGATCACCGTGTTGTGCATCGCCTGCCCGTGCTCCCTTGGCCTGGCTACGCCCACTGCCGTGATGGTGGGCACGGGGGTCGGGGCACAGAACGGCATCCTCATCAAGGGTGGGGAGCCTCTGGAGATGGCACACAAGATTAAAACGGTGGTGTTCGATAAAACCGGCACCATTACTTACGGCACGCCGAAGGTGATGCAGGTGAAGATCCTGGTGGAGGGGAACCGTATGCCTCTTTCCAGACTGCTGGCCATCGTGGGGACGGCGGAGAATAACAGCGAGCATCCCCTGGGGGCTGCGGTCACCAAGTACTGCAAACAGGAGCTGGGCACCGAGTCTTTGGGCACCTGCACTGATTTCCAGACGGTGCCCGGTTGTGGAATCCGATGCCAGGTCAGCAACACGGAGATGCTCCTGAACCGAAGGACGAGCAACAGTGAGGAGAAGAATCGCAACGCTGCTCTGGTGCAGATCGACGGCAAGCCCAGTATTGAACTGCAGCCTTTAAATATGGACTCTGAGCCCTTGTCCCTGGTGCAGACCGCCTCCTGCGCTGTCCTGATTGGGAACCGGGAGTGGATGAGGAGGAACGGCCTGCAGATCAGGGGAGATGTTGATGACGCCATGGTTGAGCACGAGCGCAAAGGCCGCACTGCCGTCCTTGTGGCAGTCGACGGCCTGCTGTGTGCCATGATCGCCATCGCCGACACCGTGAAGCCTGAAGCACACCTGGCGGTCCGTACGCTGATGGATATGGGCCTGGAAGTGGTCTTGATGACAGGGGACAACAGTAAAACTGCCAGGGCCATAGCGGCTCAGGTGGGCATCATGAAGGTGTTTGCGGAAGTGCTGCCCTCTCACAAGGTGGCGAAGGTGGAGCAGCTGCAGCAGACGGGCAGGCGGGTGGCCATGGTGGGAGACGGGGTGAACGACTCCCCTGCCCTGGCCATGGCAGACGTGGGCATCGCCATAGGCACTGGCACAGATGTGGCCATTGAAGCCGCTGATATTGTACTGATCAGGAATGATCTTCTGGACGTGGTTGGCAGCATCGATTTATCTAAAAAGACTGTGAAGCGGATTcgaatcaattttatttttgccttaaTTTATAATATCGTTGGAATTCCAATTGCTGCCGGTGTGTTCATGCCCATCGGCCTGGTGCTGCAGCCCTGGATGGGCTCTGGGGCGATGGCGGCCTCCTCGGTGTCCGTGGTGCTGTCCTCGCTCTTGCTCAAGTGTTACACTAAACCCACTGCTGAGAAGCTGGAAGCGCGTCTCCAGGGCCAGGCCCGCCAGAACAGCCTCTCTGACATCAGCATCCACATCGGCATTGACGAGAACCGCCGCGAATCCCCCAAGCTCAGCCTCCTGGACCGCATCGTCAACTACAGCCGGGCCTCCATAAACTCCCTGAGGTCCGACAAGCGCTCCCTCAACAGCATGGCACTGAGTGAGCCCGACAAGCACTCGCTGCTGGTGGCGGGTGGCCGCTGCGACGAGGAAATGCTATGACACCCCAGAGGCGCGACGCGGTACTGACTGCCCCTGTAATTCTGCACACCTTGGTGCGAGGCGTGGGGAACCGGGCCAGTCCGCTCCAAGGCTTTCACTCCAGATGAAGAAgaggattcatttattttcccctcctTTCTGCCAGTACACTCAAAATGAAGCGCATGTATCAGGTGTTTGTTATGTGTGAAAGTTAGCATCCTCATTTCTAACTTTCATTGCTCAGCATAACCTGCTGTGGGTTTCAGAGCTTTGCTATATACAGAAGAGTTGTTTTCAGCTTAATTCCACCCACTCTTAGCAGTGAATTGAGATATCTGGGTAACccattatttatgattttgcGCTATAATAGTTAATGTGATTAACCGATTCCATTTTTAATTGAGGAaggaaacaaatgtgaaaaattacTTTAAGCTCACTTAAGATCTTTCTGCATTGTAATGTAGTATAAAACCAAAGGCAGGAAATATTTAATACGTAAGCTCTATATAGAATCCCTCAGGACTccaaaaattacatatttacaaactGCTGTAAATAGCAATGTGTACCAAACacgcatttattttgtattaatcttaATTATAATGACAAATTCTAGATGTATATAATagcatacatacattatttgcTAGAGTTTGGTAGACATTATTAATTACcgcctgattttgtttttgtttattttactccCTTATAATTGgttatatatttcatttaattgaaataagtttgtttttatgacAATATATGTACATCTATaatgtgtgcgagtgtgtgttaTAGTACATTAATACACTTAAGATGCATAATCTTCAAAATTTAGTTTGGTTGTATCGGTGGATCCTCTTGCACAGGGCCACCATGTAGTTCAGTTCTTTCATACTTACTGTAAGTACTATTCAGGTCAGAACTGGACTGTGTTTACAGtgcttgtatttttaattcatacttCCCACAGTGCCTGGCTGTTGCTAGTGGTTATTTGCCTTGCTTTGCACAAGCAAAAAttgttcttctattttttttatagttacTATGTAGTCATTCCAAAGTTGCTGACATCCATTGAAactgatttctttcttttccttcgTTAGAAATACTGGAACAAATTCTAACGCATCATATCAATGCCTAGTTTGTGTGAAATGGAATTTAAATTAGAATGATATTCCTTATTTCTGGAAGGTCATTGTTGATGAAACTAATGCTTGCATATGATAATCAATTTAATGTCACAGAgggttgcatttaaaaaatatatatttatttgtagtgaaagtaaagcaaaatgttttcttgctgTTTATCATTAGTAAATCCtgactttttttaaagcatgtgtggttttcttttaatcaaaatataatgcaaggatattttttttaatgattattatattacCAGAGTTTGTCATTTGATCAGTATTATCACACAGCGTTGTTGGGGTGTAGTGTATCCAGAAACCTGTAGGGTACAGGAGTGAAATGTAGTGGTAGAATGTTCTGTACCAACAATTTGATGAGAAATCTTTAACGGAAGCAGGTTTGAATCAAGAAAGAGTTCATATGAATATGtcaatcaaaatacaaaaccactGTGGCTTTGTGCAGGATGCATTTTTCTTTAGTGGGCTACTTTGttgtttaattgaagtttaGACTCTAACTGTATATGCCATGAAATGCACCTTGACCTTTTAGGCTAGTGTCAGAAGAGGCTACATTTTCTAATCAGGCTGTGTAATACTGATTAAAaaagcttgtttgtttatttggccATGCTAAAAGGCCCACTTAATTACACACCACCAGAGTTAGTTCTTCTTTCTTCAGTATGAGTGATATGTTTGCAGTGGTAGATATTGTTGCACTTCTCATTGGAATATTCTGCAATGGGCCAATGCAGATTGTGTGTGAATGAATGCAGTTTTGCaaattgagaagaaaaaatataattatattagatCGTAGAATGCCAGGAATACGCACGGAGGTGCAGGAGTGTGGAGACTAGGCCTACACATCATCACATCCTGCTGTTACAAGACTGTATCACTGTGACCAACACACCAGTGGCACTTGTGTCTCTGCTCTGTTCTCAAAGTTCGCACCTCTAGTGGTAGTGTGATGGCTTGGTGCTGTACCCTTCCTTCATTTGACACGTGCTAGTGTCTTTAGAGAATGTGTTAGTGGATAGATCTACCTCAGGTCTaccttttgtacattttatctCTTTGGTTTTTATAATACTTTATAGCATGTCATTCCCATCCACATTTTACCTCACTGCTGCAAACCTTGTCTTAGCCTCAGAGAACCCTCACACTGTCCCTGTCACAGCTTATGAATTCGGTCCCAACCTATAGTTCGAGGAAAAGCCTTCTCTAATTAAGCCACTGTCACCGAAGGTATTGACAGGgattgctttcttttttgttgtaaGCCGCTTCACAGTCTGCAGTCTGCTAACAAAAGCGTCTTTGCCGAGTTGAATCGGCATACACTGGCGTTAATTGGGACTTCGTAAGGGTCACATGATACAGTTTTATGAAAAACCTGGAAAGATGTATCCTTTTTTGTCCGCATTTGTCTGCTCctttattttccaaatacaCTAAGTCTTCAAcctaaacaaatgcattttatgtagttattccatgttttttttttaatatatagctAGTCATATGTATTGCTATATTATCTTGCAACTGCCACAATGATTGTGGCTGAAAGGAGAGTCTATACATGTTTGCACAGGTAGTTAGAGAGAAGCCGTCTCTGTGTACAATTCTGTAAAGGGTTGCTGAAGTTCTGTTTTCTGATGGTGTTTATCTTTGATACAAGCGTTACAAACGGGATGTATgatgtttgtaattgttttatatgtaaagtTGTATGTACAATCGTGTAAATAAACCACATTTCTG

Function

GO:

id name namespace
GO:0030001 metal ion transport biological_process
GO:0046688 response to copper ion biological_process
GO:0016020 membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17686 copA, ctpA, ATP7; P-type Cu+ transporter

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021131 True 7609 mRNA 0.47 22 6549111 6572385

Neighbor

gene id symbol gene type direction distance location
AMCG00021132 pgrmc1,LOC107726794,LOC107713219,LOC107697348 coding upstream 15796 6530980 ~ 6533315 (+)
AMCG00021130 NA coding upstream 578738 5966488 ~ 5970373 (+)
AMCG00021129 LOC107664771,LOC101066135 coding upstream 666277 5881916 ~ 5882834 (+)
AMCG00021128 pcdh11,LOC107741043,LOC107661995,LOC108417465 coding upstream 761528 5769167 ~ 5787583 (+)
AMCG00021127 tsc22d3,LOC108246678,LOC105928685,LOC107377168 coding upstream 1654548 4891249 ~ 4894563 (+)
AMCG00021139 pgk1 coding downstream 791 6573176 ~ 6583201 (+)
AMCG00021138 LOC103395702,LOC102211599,LOC101478708,LOC102313148,LOC105902075 coding downstream 13755 6586140 ~ 6615644 (+)
AMCG00021137 NA coding downstream 65336 6637721 ~ 6643062 (+)
AMCG00021140 dcx coding downstream 144573 6716958 ~ 6724763 (+)
AMCG00021142 NA coding downstream 216750 6789135 ~ 6811229 (+)
G83752 NA non-coding upstream 1730782 4818097 ~ 4818329 (+)
G83741 NA non-coding upstream 1818167 4634736 ~ 4730944 (+)
G83716 NA non-coding upstream 2256747 4292126 ~ 4292364 (+)
G83710 NA non-coding upstream 2262511 4280108 ~ 4286600 (+)
G83704 NA non-coding upstream 2283129 4262001 ~ 4265982 (+)
G83900 NA non-coding downstream 70797 6643182 ~ 6643523 (+)
G83904 NA non-coding downstream 88344 6660729 ~ 6662819 (+)
G83914 NA non-coding downstream 106818 6679203 ~ 6681917 (+)
G83976 NA non-coding downstream 478812 7051197 ~ 7056132 (+)
G83983 NA non-coding downstream 512833 7085218 ~ 7088239 (+)
AMCG00021133 NA other upstream 2510 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 2315314 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 2419738 4127070 ~ 4129373 (+)
G83624 NA other upstream 2750328 3797841 ~ 3798783 (+)
AMCG00021076 NA other upstream 4318964 2209482 ~ 2230147 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other downstream 539612 7111997 ~ 7121237 (+)
AMCG00021180 NA other downstream 1467785 8040170 ~ 8043299 (+)
G84301 NA other downstream 2059342 8631727 ~ 8633410 (+)
G84425 NA other downstream 2843882 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 3897678 10470063 ~ 10719327 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000000_18618397_18645425 ATP7A coding CI01000000 null 18617318 ~ 18645425 (-)