AMCG00021179


Basic Information

Item Value
gene id AMCG00021179
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8048831 ~ 8074602 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021179
TGCAGATCAAAGCTGACTTAGGCAGCAGACGACTTTTGTCAGAGCAGAAGTTTTAGGCTATCCATTGAGAACACGTGTTAAGAACTTAAACTGGAATAGAGAAACCCCAAGGTCCTCACAGATGTATAAAAACGCAATAAATGCCACACCGTTTTATTCAAACGTACCTTaacagaataatatattttttgtggtaCATCTAACGTCTGATTTAAAAGACTGGAGTTTTGTCCTTTTTCCTgtatatgatgttttttttcctgttttaagtgttttatgtgCATTTGAGGATCCCTCCGTTTAATGTCAGCTCTGTTTAGTTTCTGACACTGCGGGGCAATTAGGAAAGACGGAAGAAGCGATTGTTTGTTAGTTTCCAGTGTAAATTTgtttaaaactacattaaatacaaagtcACGCAAGAACCCGATTGAAAGACATACTGAGGCTTTGTAAACTACTTTGGTGTGATGTAAAGAATGCGTTTTTGTTAGTTGTACAGCTGTAACAACAACCAAGTGGCCCACTTGTCAACACACGAGAGTCGCTCCATACTGATCTGCTCGCTGGCGCTGCTGGCCGCATCCCTCTCATCATCAGCTGCGTGGAGAGATGCCGGTTTCCCAGGTGTGAAGTTGCTCGGACAGGCGACCATGAGGAGCCGCAGTAACTCGGGGGTGAAGCTCGATAACTATGCCCGACTGGTGCAGCAGACGATCCTCTGTCACCAGGACCCAGTGACCGGTCTTTTGCCGGCCAGTGAGGAGCAGAGGGATGCGTGGGTACGAGACAATGTTTACAGCATTGTGTCTGTCTGGGCGCTGGGCCTGGCCTACCGCAAAAACGCAGACCGAGATGAGGACAAAGCCAAGGCCTATGAGCTGGAACAGAGTGTCGTGAAGCTCATGAGAGGCCTGCTGCAGTGCATGATGAGGCAGCTGGATAAGGTGGAGAAGTTCAAGTACAGTCAGAGCCCAATGGACAGCCTCCATGCCAAATACAATCTCCACACCTGTGCCACCGTGGTAGGCGATGATCAGTGGGGGCATCTTCAGGTCGATGCCACCTCCCTCTACCTGCTCTACTTGGCACAGATGACTGCTTCAGGACTCCATATTATCTACACTCGGGATGAAGTCGACATAATTCAGAATCTTATCTTCTACATTGAAGCTGCCTATAAAGTTGCAGACTATGGCATGTGGGAAAGAGGAGACAAGACTAACCAGGGAATCCCAGAGCTCAATGCCAGTTCTGTTGGATTGGCTAAAGCAGCACTTGAGGCTTTAGATGAACTGGATTTGTTTGGAGCTAATGGAGGCCCAGGGTCAGTGGTTCATGTCTTACCAGATGAGGTTCAACACTGCCAGTCCATTCTTCATTCAATGTTGCCAAGGGCTTCAACCTCCAAAGAAGTGGATGCCGGCCTCTTGTCGGTCATCTCCTACCCGGCCTTCGCAGTTGAAGATATTCAACTAGTCAATATCACAAAGGAAGAAATCATTTCCAAGCTCCAGGGTCGGTATGGGTGCTGTCGCTTCCTCAGAGATGGGCACAAAACCCCGAAAGAGGATCCCCACAGACTGTATTATGAGCCTGCTGAGCTCAAATTGTTTGAGAACATCGAGTGTGAATGGCCCTTGTTCTGGACCTACCTCATCCTAGATGGCATCTTCATCAACAGTCCCGAACAGGTCCAGGAGTACAGAGAGGCTTTAGAGGGGATCATGATTAAAGGGAAGAATGGAGTTCGTCTCGTACCTGAACTGTACAGCGTCCCTCCAGACAGGGTGGAGGAGGAGTACAGTAACCCTCACACTGTGGACAGGATTCCCATGGGCAAACTCCCTCTGATGTGGGGACAGTCGTTGTACATAATAGGGAACCTGCTGGCTGAGGGATTTCTGGCTCCAGGAGAAATCGATCCCCTCAGCCGGAGGTTTTCCACTATCCCCAAGCCTGATGTTGTGGTCCAGGtcTCTATACTTGCTGAGACGGAGGAGATCAAAGCCATCTTACAGAAGCATGGATTTAACGTGGAGACCGTGGCTGATGTTTACCCCATCCGAGTGCAGCCCGCCCGCATCCTGAGTCACATCTACGCAAGGCTAGGTCGCAACCGGAGGCTGGGCCTTACTGGGAGGCCGTGCCGTCGCATGGGTGTGCTCGGAACCTCCAAATTCTACATTATCTGCAACTCCATCTTCACCTTCACCCCTCAGTTCATTGACCAGCAGCAGTTCTACCTGGCTCTGGACAACCGCATCATAGTGGAGATGCTCCGAACCGACCTCTCTTACCTCTGCAGCCGCTGGAGAATGACCGGGCGGCCGACGGTCACCTTCCCCATCTCACAGACCATGCTGAGGAATTCTTCTATCAATCTTGCAGCTGAAAACCAGTTAGATCTGGATCCGCCTGTCCTGGCAACCTTGAGAAAGCTACAAGATGGCTACTATGGAGGAGCAAGAATTCAGACAGGCAAGTTGTCCGAGTTCTTGACAACCTCCTGCTTTGCTCACCTCAGCTTCATGGACCCCAAACAGCATGGTAAGCAGTTTCACAGTAGTGTCTACAGTGACGATGACGAAGACGTTATTGTACGGCCCAGCACTGGCTTGTGCTCAGCAGAAGGCCTGCATGCTTTTCACTTTGCAGATGATGAGGAGGGCGATGATCTGACAGCTTATTTAGATCAGCTGCTGGAGAGTGGGGCACCCAGGCCCAGCCCGGTGACCGACAAGCCCAGGGGAGGACTGGGCCTCTTCCGCTCGGCCGCACACCAGACCCTAGACATGGTATCCCTCATGAAGAAAGCCAAGGGCCTCAATGTGCAAAATGTACAAATGTACATTCCCAGCAAACTGTTTCGAGCCCGTCATCCGTCCCTGCATCTCCTGGAGTCAACGCTACCTCAGGATTGTCAGGCCCCTCGAATGGCAGTGAGCTCAGAGATTGATCTGCCCAAAGACTCATCTGGCCAGACTGACTACAGGGCTCTGGTGGAGCAGCTAAAAACGTGTCCCTGCTTTCAAGACCAGGCCGACATCCTATACATCCTCTTCAAGAACAAggGCTTGGACTGGGACACTGAGCTCCACGGGGTGGGCACCACGGTGAAGGACCTTCTCACTGAGCTCTACAATAAAGTTGGCGCCATCCGCCAGTGGGGCCTCATCCGCATGATTTCATTCATGTTGAAGAAGAAGGTGGAAGCTCTGGATGAGGCCTGTTCAGATTTACTGGCACACCAGAAGCATCTTACAGTGGGCCTCCCGCCTGAACCTCGAGAGAAGACCATTGCAGCGCCCTTGCCTCCAGATGAGCTGACAAAACTGATTGATGAAGCCAGTGACAACAACATCACTATAGCCATGCTGACTCAGGAGATCATGATGTACCTGGCGATGAACATCAAGAGCCAGCCGTCCCTCTTCAGTGAAATGTTCCGCCTGAGAATCGGACTCATCATCCAGGTCATGGCCACCGAGCTCGCCCAATCTCTCAACTGCTCAGGCGAGGAGGCGACTGAGAGTCTGATGAGCCTGAGTCCCTCGGAGCTGAAGAACCTGCTCCACCACATCCTCAGTGGGAAAGAGTTCGGAGTGGAGAGAAGTGTTCGGTCTGTGGATGCCAGCCAGGCCATCTCCATTCGTGAAGTGGGCAATGTGGGAGCGACCAAGAGCGAGAGGGCAGGCATCAGCAAACTCAAGAGTGACATGAAGCAGTCCTCATTGGTGCCACCCATGGACAATGAAAGGAGTGAATCAGAGaAAGCAGGAAGTCCCTCCTTCGAGGGGTTCCCCACAGGTCCTTTCGGGGCCCTTGGTGCCCGGGACAGCAAGCAGGGCCAGTGGCTGCGCAGGAGGAGGCTGGACGGGGCGCTCAACAGAGTACCGGTGGGATTTTATCAGAAAGTCTGGAAGATCCTACAAAAATGTCACGGACTGTCTATTGAAGGTTTTGTCCTCCCGTCATCAACAACTAGAGAGATGACTCCCGGTGAGATCAAGTTTTCGGTGCATGTGGAGTCCGTGCTGAACCGCGTGCCTCAGCCCGAGTACCGGCAGCTGCTGGTGGAGGCCATCCTGGTGCTCACCATGCTGGCAGACGTCGACATCAACAGCATCGGGGGGATCATCCACGTGGAGAAGATCGTCCACATGGCCAACGACATGTTCTACCAAGATCAGAAGGAGCTGGGGGCCGAGGAAGACATCATGGAGCGAGACAAAGCCACGGGCATCTGCAAGCTGCTCTACGACAGTGCCCCTAGTGGCCGCTTCGGCAGCATGACCTACCTCTCCAAGGCCGTGGCCGTGTATGTGCAGGACTTCCTGCCCAGCGCCGCGTGTGCCATGCAGTGACAGCGCACAGGGCCCGGCCTGCATGTGTCAAACCGTCCCCCGCGCCGCCTTCACACCCGAATCCCTGCCTTGTGCTTTATTAGGGCTCTGTTTCCTTGAACACTGAAGAAAGAATGGATTTCAACAAATGCTTACAAGCCTGCCTCACAGAATTGTTTTAAGCGGTAGAGCAACTGCATTATTGTTAGTCTTAAATGACAAAAACGCAAATtgaatcttgtttttttttcttctgttattgCCAGTTTATGACTAATGGAAGCTAGATTTAAAATGACACCAAAAAGCTGAAGCCTTATGCATGATTATATATTATCCTTTATAATGTATAAACCTCAgcatgttttcttaaatgttcATACTCCTCCTCACCACTCAGCTCTCTTCAGTCATCTCAGGCAGCTGTATGAGATGCTATTCGATGTCTTTGTGAATTCAGGGCAGCTGGGTTTGACCCGAGGGGAAAGTGTTTGGTTTTAAGTGCCTTTCCTTTCATACCATTCAACACCATtgtctatttaaattattaacgTATCCGTACAGAGTCTGGTGTCTTAAGAGTTACAATTGCTTCACCCTTGAGATTTTTATCAGAACAGCTGGCAAAATGCTCTTGGTCCGCCGAAGTGTTTTATAATTCTACAATTTAGCCTGGTTTAGTGAAggctctctgtgtgaagagaTGTGAATGAAACAGGAATAGGAAACGAAGAAAACTAATCTGCACATAGGGTTGAGTAATCAGACTCTCCACTCAATCAAACAGGATcagtgttttggttttattttcacatgcgGTGGTGTGTCCGCGTCGttgtttcttttatcttttttgttgtagttttgcTTTTGAATATATGCAGCTGATGTCTTCCCCCTTTACTGTTAAAACACTGATATATTCACAGTACATGGAAATAACAGGCATTTTCACTTTAGGACCTTTTCCCACAAATGTGGGGCAGGTTTCAAAAACGGTAATTATAAGGAAGTAGATTCTGTCGTAGTTTATTAATTTCCCACCAACTATTCTGTTTTCAGGGAATGGCTAAGATACAAACTTACACATTAAACATGGACATTAAAAGTGCTGAActctttattatgattattattattagtctcttacatttttgttataaaggaaacaaacacattttggtttaaaaagtaataatttggcatccttattttagattatttgcAAAGTGCAGAGCATAGTTGAAATGATTATTTTGTGAATCCTGTTTGAGtaattgtttactttttaaaagcagcatatatatatatatatatatatatatatatatatatatatatatataatataatgtttgcACTGTGATATCCTGTGCTTCTGATAGTATTGTTTTCAGCTTGCGTCCCATCGGGGAAAAAAgtgtgaattaataataataataataatgttgccaTTTTAATTCAACTCAATTAAAGGGCTGCAGTTTGGAACACAATCCAGAACAAGTCTAATGATGAACATGTAACACTTCTGCATATttctaaacatatttttaattacaaaatattagaaaaacTTAACATTATGCTCTGTAACATAGTTATAAGAGTCTTATTAAACTGGTACAAAGCCATAATTGTTTCTTATACAGGCAATGTGAGTTGCTACCAACATCATAGCAGCTTTGATTGTCACTGCCATGCATGtgctttttcaatatttatttatttatttgaacatttaaattgcattctTGAGCCATGTGACAATGTATCCGCTTACATGTAAACCTCAAGTCTAGTCTCTTTACAATGATAATACCTCTTACATGGTTAATAATGGTTAAAATATCTCGCACCTCAATGCAACAACAAATATATCCTACGTTGTTTTATTTAGGCCCTTTCATTGCACACAACTACCATTGGATAAGCTGCTTATTATGTGTTCTTGACTTATGTTTTAGATACTGGAGGGAATCATTAATTTAACCCACTAAATAACTACAATTTGTACCAGAAAACATCTGGAGGAGATCTGAGGCATTGCTCACTGGCATGCAAGTGAGAAGTgaaactgttttgtgtgtgtgtgcgcgtgtgtttgttgttgtttcagatttttaaacctgtaacatttatttttgtctttcttttttgttgtgcaACATAGTTAATGTTGGAGAGATTAACTATAAGACAATTCAGATAACTAAATGATTTGGGTGTTCTTGCTGGGATTGTTTATTTGCTACTGAGTGACTGAAACCattaagtaataaaataataaaagcatgttCTATATGTGA

Function

GO: NA

KEGG:

id description
K07190 PHKA_B; phosphorylase kinase alpha/beta subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021179 True 6655 mRNA 0.46 33 8048831 8074602

Neighbor

gene id symbol gene type direction distance location
AMCG00021174 NA coding upstream 13473 8032005 ~ 8035358 (+)
AMCG00021171 NA coding upstream 99245 7934355 ~ 7949586 (+)
AMCG00021170 NA coding upstream 117315 7925183 ~ 7931516 (+)
AMCG00021172 LOC108434852 coding upstream 142797 7872156 ~ 7906034 (+)
AMCG00021168 LOC105903079,LOC105902376 coding upstream 247558 7786997 ~ 7801273 (+)
AMCG00021181 hdac8,LOC107707919,LOC107711573 coding downstream 665 8075267 ~ 8091708 (+)
AMCG00021177 NA coding downstream 30806 8105408 ~ 8105869 (+)
AMCG00021178 rps4x,LOC103480264,LOC107373838,LOC103372676 coding downstream 37413 8112015 ~ 8116824 (+)
AMCG00021184 NA coding downstream 46043 8120645 ~ 8121931 (+)
AMCG00021182 NA coding downstream 113212 8187814 ~ 8201634 (+)
G84155 NA non-coding upstream 69005 7978217 ~ 7979826 (+)
G84095 NA non-coding upstream 348148 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 488711 7553620 ~ 7560120 (+)
G84078 NA non-coding upstream 536843 7511369 ~ 7511988 (+)
G84061 NA non-coding upstream 622484 7425931 ~ 7426347 (+)
G84196 NA non-coding downstream 127236 8201838 ~ 8207378 (+)
G84244 NA non-coding downstream 300729 8375331 ~ 8376038 (+)
G84276 NA non-coding downstream 481359 8555961 ~ 8558418 (+)
G84298 NA non-coding downstream 512996 8587598 ~ 8588963 (+)
G84477 LOC108440084,LOC106603334,LOC103024645,LOC105026974 non-coding downstream 1790084 9864686 ~ 9878867 (+)
AMCG00021180 NA other upstream 5532 8040170 ~ 8043299 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 927594 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 1502230 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 3815034 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 3919458 4127070 ~ 4129373 (+)
G84301 NA other downstream 557125 8631727 ~ 8633410 (+)
G84425 NA other downstream 1341665 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 2395461 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 2888546 10963148 ~ 10987174 (+)
G84749 NA other downstream 4000743 12075345 ~ 12100707 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location