AMCG00021170


Basic Information

Item Value
gene id AMCG00021170
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7925183 ~ 7931516 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021170
CCATCACTCAGTTCCTCATCTCATTCTTGTGAAGACTCGTAAAAAgagttttaaaatctgaatatttatttcttcttgtgGTCAGGCAAACCCAAGATGTCACTTGAGGAAGAGTGGTTAAGCAGTAGACTGAGGCTATGTGAACTAAGCATTGACTTGGGAACAGGTACAGACCCTGAACAGaCACAAGGAGACATTCTTTTGAACACAGGGTCGGCTTCCAGGCCTGCTTTCAACACACCTGCTGTGTTAAATACACTCAGGGAATGCACACACATTCTGCGTGAGGCCCAAAGGAGGGATTCTGTGGAGCAACAAATGGAAACTGATGCACCTTCTATGGGGGTCACAGTGCAAGCACCCACGGAAACAAACATTCCCAGCTATGCCAACTCTCTTGCCATTGATATAATGAGATCTGTGCAAAGTCAGTGGAAACCCAGAGAAAAGGGAATTCCTCTGTCAGGCAGGGCTCCTGAAGTTTCCCATGGACCCCCAGGTCATGCAGGGACAAGACATGGAGATATTGATAGGCATAGGCATCCTGCTGAATTAAACCTTGAAGATGCCATGGAGAGATTGGCTCAAGGGCTCACCTCTATTGTTATTCAAGAAGCCCTGCAAGAGATGGATACAGCCAGGTCTGAGTGTCATGTTTTTCCTAGGCAGGTCTCCATTATAGATGAGCAGAAACGGAACGCCCTCCAGTCTATAGTTAAGGAGTTTGCATCCAAAATGTCAAAAGATCTGAACATGGAATGTATGCATGACTTACACCAACAAATAATGTGCCTCATCTCAGGATCTCTGCCGGAAAGGAAAGGTTTTGCATTGGATGTGGAGGCTGGAAATACTGGGACTGGCACAGAGAAGAGCTCAGACTGCAGCCAACCACAGTTGTCCTATCGGTTCTCTGGTTTAGTGGGGGAGGTGGAGAATGAAACTTTTTCTAGGCCTTGCCCATGTCTTTCAAGATATCATCGCCCAGGCTCCTCTGGCTCTCTGACCACAAACAACTGTTGCTCTATCCTAGCCCAAACTGGCCTCCCCAGCAAGGGCTCCATCGACTACCCTGACGCCCCTCCACCGACTCCTCTGGTCCCTGATATAGGCAAGAGCCGTGACAGTTTCACCAGGAAGTTGAAAGGTGGACTGGCCAAGGAATTTCTCCCATCACCACCTCCTCCAACCCCCAAGGACCACCCCACTCACTCACCCCAAGAGGCCCAGGAACATAACGAGAGCAAAGCAGAATTTGTGGCCAAACTCATCCGCTCTCTGTCTCTTGAATGTTTCCGAATAAGTCCAGATAGGGAGGAAGAGACGGGTGGGCAGGTAGTAGAGGATAATCCGTCACGGTCACCTGGAAAGAGTTTTGAGGAGAATCAGGGGTTATCTGATTATGCATCTCAGCTGGCTTCAAAGATATTCAACTGCAGTCTGATAGACTCAAACAAGGTGACCGTCACAGACAGCACATCTGCAGGACTTTCTCCGAAGCAGGCTCCTTTGCAGACTGAATGTCCCCCAAAGAGACATTATTCTGATGGAACAACTCAGGGAATAAAAGGAGAGGTTCCATCCCTGCAGCTTCAAATCAATGACACAAACATAGACAAAGTAGCACCTATAGGGAATGGCAGTCATCCACTTTCTGAGGCCACCCTGCACAACATTGCAGACAAGTGGGCAAAGGATATAATAGAAGACTCATTAGAGGTCATGACCAGGGTATCAAGAAAGACAGAAGAGGCAGACAAAAATGGCATTCACTCAGATCATGACAAAACAGTCAGCCAGCCGTTTAATGCAAACTTTGGCAAAGAAGGAATCCATAATCCGGCAACAGAAAGAGACTTGCCAGGAACAATTCCTGCTGCTAAGGCCCCTCTTTGTGACACAAACTTCGATCCTCAGGTTTCCCAGAAGGCAGACCTGAACAGCTTTACTAGGCAGCTGATCACTGATATTCTGCTTCCAGTTGTCCAAGAACTGAAGGATCACACTGCTGCCAACCCTAAAAATCCCATTGAAGAAATAGCCGAAGGACTGAGTAAAGGCATAGTGGCCCATTCTATTCTGTCAGTGGCAGAGAATAAAACTTCCCAGTCAGGAAGAAGTCCAACCAAACTGAATTCCAACACGCCAGAACCAAAAGTGAGAAATGGCTCTCATACAGAGGAACTGGCTAAAGTGATTGTGGAACATTCATTGGAAGAAGCTCTGAAGGCCTGTGTTGCACATCAAGGTGAGGCTTCTTATAGTGAACTCAATAAAGCCCTGCCCAAGACAGGACTCCAACCACATGCTCTTAGACCAGGTGCCCGGGTGGTCTCTCAGCTGGACACTCAGAATGACATCAGCACACAGCAGCTGGAGGGCGTGCTCCATTGGGCGGCTGTCTCCCAGATGCAAATATCTGCTTTGCACGTTAAAACTCCAACTGAGCAACTTCAATCTCAGTTGTCCAGTGTGGCGCGTATTGCAGTGACGAATACCTGGACCGTGGGAGACCTGTTGACCTCACTGCTCAACTACTGTCATGCAAGACAGCAAGCTGAAGCCAGGGGGCGCTCTCTTCACATCTCCTTGCTGGAATGGGTTCAGGATAATCTTCAAACACCCGCCGTGATCGACTGACACATCTCACCAGCAAACCAGCACTGGAAACAGATTAAACAGAGTTAACAATACAACTGGTTAAAACGATTAAAGTTAATTTGAGTTTGAAAAACATGGGACTAAATTATAACCTACAAATGTCATGTAATTAGAATAAACAATCAACTTGTGAAAAGTCACTCACATAATCGATTTATGGGTATAGTTCCGTTTTATTTAATAATCCAGGTCAAACACAATTTCTCTTTGTTCATTTATACTgcacttgtatttttttaaagttgacTATGCATGttccatataaataaaatacataaatgactgatatttcttaaatatattaaaaac

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021170 True 2970 mRNA 0.46 4 7925183 7931516

Neighbor

gene id symbol gene type direction distance location
AMCG00021172 LOC108434852 coding upstream 19149 7872156 ~ 7906034 (+)
AMCG00021168 LOC105903079,LOC105902376 coding upstream 123910 7786997 ~ 7801273 (+)
AMCG00021167 NA coding upstream 158337 7762021 ~ 7766846 (+)
AMCG00021165 LOC106511680,LOC104964146 coding upstream 426143 7493979 ~ 7499040 (+)
AMCG00021159 NA coding upstream 453209 7449118 ~ 7471974 (+)
AMCG00021171 NA coding downstream 2839 7934355 ~ 7949586 (+)
AMCG00021174 NA coding downstream 100489 8032005 ~ 8035358 (+)
AMCG00021179 NA coding downstream 117315 8048831 ~ 8074602 (+)
AMCG00021181 hdac8,LOC107707919,LOC107711573 coding downstream 143751 8075267 ~ 8091708 (+)
AMCG00021177 NA coding downstream 173892 8105408 ~ 8105869 (+)
G84095 NA non-coding upstream 224500 7657193 ~ 7700683 (+)
G84090 NA non-coding upstream 365063 7553620 ~ 7560120 (+)
G84078 NA non-coding upstream 413195 7511369 ~ 7511988 (+)
G84061 NA non-coding upstream 498836 7425931 ~ 7426347 (+)
G84049 NA non-coding upstream 526665 7397060 ~ 7398518 (+)
G84155 NA non-coding downstream 46701 7978217 ~ 7979826 (+)
G84196 NA non-coding downstream 270322 8201838 ~ 8207378 (+)
G84244 NA non-coding downstream 443815 8375331 ~ 8376038 (+)
G84276 NA non-coding downstream 624445 8555961 ~ 8558418 (+)
G84298 NA non-coding downstream 656082 8587598 ~ 8588963 (+)
AMCG00021150 fundc2,LOC106603170,LOC107661711 other upstream 803946 7111997 ~ 7121237 (+)
AMCG00021133 NA other upstream 1378582 6544234 ~ 6546601 (+)
AMCG00021114 NA other upstream 3691386 4202711 ~ 4233797 (+)
AMCG00021113 vma21,LOC107565438,LOC107741184,LOC107680358,LOC108442053 other upstream 3795810 4127070 ~ 4129373 (+)
G83624 NA other upstream 4126400 3797841 ~ 3798783 (+)
AMCG00021180 NA other downstream 108654 8040170 ~ 8043299 (+)
G84301 NA other downstream 700211 8631727 ~ 8633410 (+)
G84425 NA other downstream 1484751 9416267 ~ 9423419 (+)
AMCG00021240 LOC107742636 other downstream 2538547 10470063 ~ 10719327 (+)
G84657 slitrk2,LOC106611993,LOC106604961,LOC107688026,LOC107588360 other downstream 3031632 10963148 ~ 10987174 (+)

Expression


Co-expression Network