RNA id: AMCG00021170


Basic Information

Item Value
RNA id AMCG00021170
length 2970
RNA type mRNA
GC content 0.46
exon number 4
gene id AMCG00021170
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7925183 ~ 7931516 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCATCACTCAGTTCCTCATCTCATTCTTGTGAAGACTCGTAAAAAgagttttaaaatctgaatatttatttcttcttgtgGTCAGGCAAACCCAAGATGTCACTTGAGGAAGAGTGGTTAAGCAGTAGACTGAGGCTATGTGAACTAAGCATTGACTTGGGAACAGGTACAGACCCTGAACAGaCACAAGGAGACATTCTTTTGAACACAGGGTCGGCTTCCAGGCCTGCTTTCAACACACCTGCTGTGTTAAATACACTCAGGGAATGCACACACATTCTGCGTGAGGCCCAAAGGAGGGATTCTGTGGAGCAACAAATGGAAACTGATGCACCTTCTATGGGGGTCACAGTGCAAGCACCCACGGAAACAAACATTCCCAGCTATGCCAACTCTCTTGCCATTGATATAATGAGATCTGTGCAAAGTCAGTGGAAACCCAGAGAAAAGGGAATTCCTCTGTCAGGCAGGGCTCCTGAAGTTTCCCATGGACCCCCAGGTCATGCAGGGACAAGACATGGAGATATTGATAGGCATAGGCATCCTGCTGAATTAAACCTTGAAGATGCCATGGAGAGATTGGCTCAAGGGCTCACCTCTATTGTTATTCAAGAAGCCCTGCAAGAGATGGATACAGCCAGGTCTGAGTGTCATGTTTTTCCTAGGCAGGTCTCCATTATAGATGAGCAGAAACGGAACGCCCTCCAGTCTATAGTTAAGGAGTTTGCATCCAAAATGTCAAAAGATCTGAACATGGAATGTATGCATGACTTACACCAACAAATAATGTGCCTCATCTCAGGATCTCTGCCGGAAAGGAAAGGTTTTGCATTGGATGTGGAGGCTGGAAATACTGGGACTGGCACAGAGAAGAGCTCAGACTGCAGCCAACCACAGTTGTCCTATCGGTTCTCTGGTTTAGTGGGGGAGGTGGAGAATGAAACTTTTTCTAGGCCTTGCCCATGTCTTTCAAGATATCATCGCCCAGGCTCCTCTGGCTCTCTGACCACAAACAACTGTTGCTCTATCCTAGCCCAAACTGGCCTCCCCAGCAAGGGCTCCATCGACTACCCTGACGCCCCTCCACCGACTCCTCTGGTCCCTGATATAGGCAAGAGCCGTGACAGTTTCACCAGGAAGTTGAAAGGTGGACTGGCCAAGGAATTTCTCCCATCACCACCTCCTCCAACCCCCAAGGACCACCCCACTCACTCACCCCAAGAGGCCCAGGAACATAACGAGAGCAAAGCAGAATTTGTGGCCAAACTCATCCGCTCTCTGTCTCTTGAATGTTTCCGAATAAGTCCAGATAGGGAGGAAGAGACGGGTGGGCAGGTAGTAGAGGATAATCCGTCACGGTCACCTGGAAAGAGTTTTGAGGAGAATCAGGGGTTATCTGATTATGCATCTCAGCTGGCTTCAAAGATATTCAACTGCAGTCTGATAGACTCAAACAAGGTGACCGTCACAGACAGCACATCTGCAGGACTTTCTCCGAAGCAGGCTCCTTTGCAGACTGAATGTCCCCCAAAGAGACATTATTCTGATGGAACAACTCAGGGAATAAAAGGAGAGGTTCCATCCCTGCAGCTTCAAATCAATGACACAAACATAGACAAAGTAGCACCTATAGGGAATGGCAGTCATCCACTTTCTGAGGCCACCCTGCACAACATTGCAGACAAGTGGGCAAAGGATATAATAGAAGACTCATTAGAGGTCATGACCAGGGTATCAAGAAAGACAGAAGAGGCAGACAAAAATGGCATTCACTCAGATCATGACAAAACAGTCAGCCAGCCGTTTAATGCAAACTTTGGCAAAGAAGGAATCCATAATCCGGCAACAGAAAGAGACTTGCCAGGAACAATTCCTGCTGCTAAGGCCCCTCTTTGTGACACAAACTTCGATCCTCAGGTTTCCCAGAAGGCAGACCTGAACAGCTTTACTAGGCAGCTGATCACTGATATTCTGCTTCCAGTTGTCCAAGAACTGAAGGATCACACTGCTGCCAACCCTAAAAATCCCATTGAAGAAATAGCCGAAGGACTGAGTAAAGGCATAGTGGCCCATTCTATTCTGTCAGTGGCAGAGAATAAAACTTCCCAGTCAGGAAGAAGTCCAACCAAACTGAATTCCAACACGCCAGAACCAAAAGTGAGAAATGGCTCTCATACAGAGGAACTGGCTAAAGTGATTGTGGAACATTCATTGGAAGAAGCTCTGAAGGCCTGTGTTGCACATCAAGGTGAGGCTTCTTATAGTGAACTCAATAAAGCCCTGCCCAAGACAGGACTCCAACCACATGCTCTTAGACCAGGTGCCCGGGTGGTCTCTCAGCTGGACACTCAGAATGACATCAGCACACAGCAGCTGGAGGGCGTGCTCCATTGGGCGGCTGTCTCCCAGATGCAAATATCTGCTTTGCACGTTAAAACTCCAACTGAGCAACTTCAATCTCAGTTGTCCAGTGTGGCGCGTATTGCAGTGACGAATACCTGGACCGTGGGAGACCTGTTGACCTCACTGCTCAACTACTGTCATGCAAGACAGCAAGCTGAAGCCAGGGGGCGCTCTCTTCACATCTCCTTGCTGGAATGGGTTCAGGATAATCTTCAAACACCCGCCGTGATCGACTGACACATCTCACCAGCAAACCAGCACTGGAAACAGATTAAACAGAGTTAACAATACAACTGGTTAAAACGATTAAAGTTAATTTGAGTTTGAAAAACATGGGACTAAATTATAACCTACAAATGTCATGTAATTAGAATAAACAATCAACTTGTGAAAAGTCACTCACATAATCGATTTATGGGTATAGTTCCGTTTTATTTAATAATCCAGGTCAAACACAATTTCTCTTTGTTCATTTATACTgcacttgtatttttttaaagttgacTATGCATGttccatataaataaaatacataaatgactgatatttcttaaatatattaaaaac

Function

GO:

id name namespace
GO:0051674 localization of cell biological_process
GO:0050900 leukocyte migration biological_process
GO:0016477 cell migration biological_process
GO:0002376 immune system process biological_process
GO:0048870 cell motility biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0060326 cell chemotaxis biological_process

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104910 lncRNA upstream 224500 7657193 ~ 7700683 (+) True G84095
TU104903 lncRNA upstream 365063 7553620 ~ 7560120 (+) True G84090
TU104888 lncRNA upstream 413195 7511369 ~ 7511988 (+) True G84078
TU104868 lncRNA upstream 498836 7425931 ~ 7426347 (+) True G84061
TU104856 lncRNA upstream 526665 7397060 ~ 7398518 (+) True G84049
TU104988 lncRNA downstream 46701 7978217 ~ 7979826 (+) True G84155
TU105006 lncRNA downstream 108708 8040224 ~ 8043169 (+) False AMCG00021180
TU105048 lncRNA downstream 270322 8201838 ~ 8207378 (+) True G84196
TU105099 lncRNA downstream 443815 8375331 ~ 8376038 (+) True G84244
TU105139 lncRNA downstream 624445 8555961 ~ 8558418 (+) True G84276
AMCG00021172 mRNA upstream 19149 7872156 ~ 7906034 (+) True AMCG00021172
AMCG00021168 mRNA upstream 123910 7786997 ~ 7801273 (+) True AMCG00021168
AMCG00021167 mRNA upstream 158337 7762021 ~ 7766846 (+) True AMCG00021167
AMCG00021165 mRNA upstream 426143 7493979 ~ 7499040 (+) True AMCG00021165
AMCG00021159 mRNA upstream 453209 7449118 ~ 7471974 (+) True AMCG00021159
AMCG00021171 mRNA downstream 2839 7934355 ~ 7949586 (+) True AMCG00021171
AMCG00021174 mRNA downstream 100489 8032005 ~ 8035358 (+) True AMCG00021174
AMCG00021180 mRNA downstream 108654 8040170 ~ 8043299 (+) True AMCG00021180
AMCG00021179 mRNA downstream 117315 8048831 ~ 8074602 (+) True AMCG00021179
AMCG00021181 mRNA downstream 143751 8075267 ~ 8091708 (+) True AMCG00021181
TU104813 other upstream 803946 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 803946 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3691427 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3795967 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4126400 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 700211 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1484751 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3031632 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4143829 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8132084 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile