LOC122350990


Basic Information

Item Value
gene id LOC122350990
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1357834 ~ 1402615 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006251676.1
ccacagaaataaaaaaataccgcagctggcaaaaaaaagaaaagaaataaatcccATCTTACAGACAATTGATCGCGGTGTTTTAGGGCCAGATTATCTGAGATACCGATCTCAAATATGttaccaaaaatgctttttagttTTGCTACTAACTAAAAGTTGTAACTGCATCTGATAAGAAGAGAAACCCGGTCAGCTAAATCAGTGAGAGAAACACGAGCTAAACATTAAACATTCGCTGCATCCTTGGATATGAATGAAGATCTCGTACCgtatactgtactgtaaaaaacacaaacaaaccaacaaaaataaCCTTCTCAATCGGCACCACAAGCAAAAAGAGAAGTTCATATGTTCTTTTTAAGAAACCAACGGAAATCCCCACGTCAAGATAGAGAAGAAAATAGGACGAGAACAAAAGCATTGCAGAGGCAAAACAGAGCAttgttattttatgcaaatgatcAGGATCGAATGAAAGGCAACAAATAAAGGCATATTTAGAGGGAAATCGGaagacatttgaaaacaaaaacttgaaattgaaaataaaagttcacGATGGCAAttaagagaagagaagaaaagaaaaggttttGGTTTTAGTTAGATCTACATacaatttaaagcaatttataaaatgcaaaaaaaaaatggcaatgtCATTCATGtcgatattttaaaaaaaacaattgaaaagaCCGCCTCTTGACGTCAGAGACCCGCAGACGCATGAAGCCGCGCGCAGGGGACAGAAGAAGTGCAAAACACAGGTAAGAAATGAACTGTCTGGCTTTCTAAAACCTCAACGGCTTGTTTAAACAAACTATTACATTAGTATGTGGTCCATAATATTTGGCATGCACGCTATAAAACTTTTCGACGTTCTTTGTAATAGCaggtaaaagtttttttggggAGTTGTGTAAACTCTGAAACGATTCGCATGCTTTTAACTGCATTCTTTGAAACGTAGCCTATTGTTTGCTAATGGCTATTTTGAGCTGCTAATATTAAAGTAtgtattattagcatttttgtaggctactttaatatttttgtacttttcacacacacacacacacacacacacacatatgagtAGCTTACCTAAAAGTAATATTTGACACTGTCACTTGtggaataaataattttttatttattttttaagaaaaggttGATTTATCACTGGTTTATCGGCTATAACAAGTACAGTTGGATTTTTGGAGAGACAGAATGCTAATAACATGTACATGCCTGTTAatcaaaggggaaaaaatattttagaaagttTTGAATAAGTGTTACTCAATAATCTTAGCTTTTTTAATCGTAACAGATGTTAATTGACCAATGTGAGCTTATGTAAAGcgtcttttttcctctttcttttgctGACTGCAGATGAAGTCTTCTTTGTGCCCCTAAATCAAGAAGGAACAACCTTTTTTAATACGACCTTCTTCAAACTTAAAATATCAGAAGGTCTTTGAGTCTGAGAGACTGATCTTAGGTTTGGGCAATGGACCAGAGAAGACAGGTACCCTGGAGCCAAGTGGTGCGGTTCAATATAGACTTTTATTACGTTTATTAAGAGGCCAATGAATATTTATAGTATCAAGCAATACAGATAAGGCGAGATTCCAATGATGTCTCAAGTTGCGATTGAGTAATGTCTATGTCTCCAACACAGTCTCACGACCAATTCATAGGtgttttacgaggtggctaattcgtacgaaGATCAGCCTGATGTCTCAAAGACTGCAGAGCACACAGGCCACAGACGGCACGTTTGCACAGaatgttcttttaaatctcACAACGGTAACTTCAAGACAGTCGCATTGAAGGAATTTCCCTTGCGGCAATTTTGAGTGACTCAGTAGAGCGGTATGCGGTATCACCGCACATATTGTTAGcctatgcatatatatatatattgtttctctgatcacaaatgcagacatatGTTTACGTTAACGATAATCAGTTATTTCTCCTCTGGATGCAAACAAATTTGTAATGTCGGGACATGGCATCACTTTATGGTAGGGGGCGTAACATCTCCATCAAACGCTTGAGGTTTTCGGCCAATCACgatgcactggatagctggccaatcagaagacacctcgctttttttttcgaacgatgagctttgtatAAATCATCCCGTTTcggaaggcggggcttagagcagaaacaataatatattatgtgGAGAATATTGTGGTTTTTGTACCAGTTACGCAGCTTGAGCCGAATTGTAATCTAAGGCAAGTTGTGGGCTAATGGATGGGGAATTGGACCCTTTACCCAAACGTCAAGGGTTCGAGGCCCAAGTCATGAAATACTTGCGTGTACACagaattgaattaataatattctTGAGGCACGACTGGGGCTAATGgcgttattaattaatttatagcCCTTAAATACTGGGTCATGCGCCATGTTTTTCCGCCTGCCTTAACCACAGGAATAATAGGCTCATTGTAAGGCGAGGTTATTGTACGAAGACACCATGATCAATTAATGGCTTTATGCCAAGTTCCTTATCTTTAGACAAAGGGTATTATTTCATTAGACTGGTTTATTAGCCTTTAATTTAGCTTCCTATGAAACCTGTGTTGTCTTTATATTGCGACCATAGTGATGGATCGACCATAGCCTCCACCGTTTGCGGTATTGGTTTGGGTGTGGTTCACTGTGTTTTTCCCATGTTTGTCTCGAGCTAAGAGAGAATGATAAAGTGTAGCATTCAGTACTTCTCATGTGCATCAGGTTTACCAGGACTCGGGAGCTAGACCTTTTAGCCTTGTTCAGATATCTGTTCGTATCCGGTTGGAATCTGATTGAAATGATTGGCCGTTCCACACTCTATAATGCATTTGCTCAGATCCGATTTGTTCGGCAGTGGCCGGGATCTACAAGAAAGAAAGGTTAAATTCCTGTGATGCCATTCAGAGTTGCTTCACTTCACAAAGACCCACCCCCAACCTCATCACAAGCCTCCAAGTCTCCGTTTTCTACAGCTGTCAGAGAGCTGCCATGACAGAATGAGTTCTTATCAACTGTCCTGTCAAATGAAACTAAACATTGACACAACGTTTAGCTTGCCACCTTGCTAACTTTCCCCATGGCTGTTCCGTGGGTGAGCCGGTTTGGTGTCGAGCTGGTTTGATTTCCTGAAAAATGAAGAAGCAGGTTTTCCAGTGCATTTTGTACGGCATGCGAAGAAGCTGTAGGAGATCGGTGTTCTGCAGCAACTTCAGCTCTGCAGCGTAACTCGAGGCTTGGTGTTCTTTCTATGCTTGGTGTACTTCACATACTGAGCCAGGGCATGATCTTTTCACGCACTCGGGATTCACTGAGCAGCAACAGAGAGGACCGTTGCTGTTTTATTGACATCTCTTATATTGTCATTCGCCGGTTCTTCTTCAGAGGCAACCTGGATCGAAAATGCAAAGGAGCGCAGAAATGCATCAGTCCACAGCTGCCTGCAGAACTCGAGCCATTCGTAAGGAATCTGTCacctgtcatttatttaatcttcaTTCATACAGCAGCGTCGCACAGATGCCGGTGCTACAAACATCAGTTTGCATACAAATACAGGTCAAGCCATGTCCTGATATAAATCTACAAGCACGCCAGAGTGGTTGTTTTCTGCACCTGAAAGCAACGGATGATGAAAGTGGCCAGAAACAAAGAACTTGACACCTGTAGTGCCTGACTGAATATGACATCTTACTTCAGAGCTTTCATGTCTACGTATGCTGGCTTACTTAAACGCTTAGTCATCACATCTAATATGCCCTTTTCGCATAGTGCACATGTTTGTGGAAAATGTCACAAGGTTGAGCCAGAGGTTTAACGATAATTCAACCATGGCAGAACCTACTCGTAAATATTCATACTTGTGACAGAATATTCTGTCTGGAttttatcaaatgaataaaaacaattctcgtgtctttttttaaaccgtGAGCCAAAGTCAGTTCACTCACGCATATCGTTGCTCTTATTCTGGGACTTTGCCCCGTTGCCATTGGAAACAGAGCCACACCTCTAGCCCCGTGAATGGGTTAAGTCACGTGTCAGGACCAACTCTCTTTGTTTCAGAAGTGGTGAACGAACAGGGGAGAGTGAAAAGAAAACATGGTGCACAAACTCCTCCACGCCAGTCACAGGGCAACTGGTAAAGCTGCAGCTTCTcataaactgacatttatttatttgcatttaaccACTCACCTAGAGatattcacattttcaaaatcctCAAAGGTGTTCAATGCTGTCTGAGACTTTAGGACCCTATTGGATTTCTAAAAAGTGAAAAGCATTTTGGAAAGCTATTTATCTCTCACCCGGTAGTGGGAAAGCAACAATCGCCTGGGGTGAACGCATGTTACTATCTCATAGTTCACTGCACCAAAAAAGGTAAGGGGCCCTGAGACAGCCGTCGGGGTCGACGAGGAGGGGTGGTCAGTCTCTGTTAGATGAGATTGTCAATGACAAAAGGTTTCACTAACACATAGTGACTGATGAATGGAAAGAATGTTAAACCCTTCAGAGACGGAGTGACAGTCTTAGCCTATATACACCCTCGGGGGAGCGAGAACACAGCTGTGGTCAACACCTGATGCCGGTCCTAAAACATACAATACgctaacattttttgtattaaataatatttttccctttaaaaacgatttaatgtttttgcaaacattaCTCTAAATATTTCCAGATTTGCATTTCGTTTCCAAGTCAACGGTGGCTACAGTGCTGGGTAATAATACTATGGTAAACTATAGCTTtgcatatgaatataattacaTGGCAGCACTACATATGCCCTGATGGTATCTCCAAAGTGGAAATGCAGTATTAAACAAGCACATATCTCGTTTAGATTCTTATTTCAGTACGTTGCAGAAAAATTCTATATCGCAAAATACATGAAATGCTGTTATTTCGTATCAGTCTCTTGCACACAACAGTAAGCCCATGTCTGCAGAGGCGAGACATCTGCCCCATTGCGGTGGGATTTGATGGGGCTGGGGGCGTAGCTCAATGCACCAAACCCAGATGAAACATGCGGATGGCTGTTTGCTCCCCATCACATGGAATACCCTGGGATTGaatgcataatttacatttacactggTGCTCGGAGCCTCACGTTAGGGAGTGGTATTCGGCTCTTACGCAATGCAACTGCATGCTGGAATCGTATTAGAAGTTAATGAACCCTGCAGGAAGCAAATCATAAGATTATGACTGAACGTGAAGGAGAGACGCATCACGCCAAGCATACAGTCCGGGGACGTAATTTCATGACGATTAACGCATAATTCTGGACTGTGAGAAACAAAGACGCGTTTTCACAGCAGGTAGAGACCGTCTCCGCCAGTGCCCTCGTTTATCTCAAGTCGAGCCTTTATTCAACTCACTCGGTCTGCTCCACTTGAAGATAACGACGGCAAACAGACGCGACGATAACTCGTCCTGAAACCCGAGACAACTTTATCGCGTCAGACTACACCCTAAAATGAAGCATGGTTAACTTCGCGCAGTCAAAAACACAACACGAACCACGTTACGGCGTGAAAACGCCGCGTGCCAAAGCTTAAACTGTACGAAATCACATCCGATGGTCAACCACGGGTGTAGTTTGTTTAGAGGACCTAAACACAGacgcttaattaaaaaaaaaatcagttttaaatgaaagtttaaCGTCGTGCGCCTTAAAGTAAACAGTTCATTTTGATGAGAAGTTAATTTTAAACGGTTTGCATGAATAGTTACTTATGTTTTAACAGTTAAACGACACGGCTCGAGGTTTTAACACCAAGGAGTGAATGGATAAGGGATGATTTAATCAAAACTGCGTTAACAAATGTTTagctactaaaaataaaatgcgcGCCTCGTTCAGCGCTTAAAGGATATTTAGCTTTTACTGTAATGGATGCACGTCGAGATGGCCCGATCAGTTCATTTTGCACATCTGGGGGTTTTACAGCAAACGTTTGAAAGTAAGCGCGTCGTTCGTCCCGAGCTTTACGCGGTTAAATAGTGACACAATGTATCTCGAGGTTTCGTCACAAACACGTTGTCGCGCCAACTAGAAACGTTCTGTCGTAATAGTTAAAGAGCTTAAAGATTTTTCTAAGAGCTGCTAAACACCAGAGACACGCAGAGCCCTTCTCTTGTTACAAACGCGCTTACTTCAGTTTTACAGCGTAAAAGTCACGAGACCGAGCGCATTCGCTTCGACAAACAGGCCATGCAACATCGCGGCCATAGAGGAGGAAGTTGTCTGCTACATTCCTGAAATCTTTGTAGTGAACCAAGAACGTCTTAAAATGGACTTCGAGCctctttttaaaatcaacagaCTTAAAACCTGTTGCTCCATCCGAGAAGAAGCGCGTTACGCGGTTTAGATGAAGCCTTGCGcgcttttcattcatttaagcGAACTAATTTGAATAGTAAAACTGCGGAAGTCTCACACTCCGGGAAGCCATTTGGAAACAACTATTCGCCAAACCATTATTTCCTCCAACTCTAAAACCACCTgtttaaacacagaaaacagcacGGCACATTCCCAGACAGCGTTTAAGAATGAAGCGACAAACACGTTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006251676.1 True 6679 lncRNA 0.41 3 1357834 1402615

Neighbor

gene id symbol gene type direction distance location
LOC122350806 NA coding upstream 11041 1334924 ~ 1346793 (+)
LOC122351641 NA coding upstream 26285 1328385 ~ 1331549 (+)
LOC122347468 LOC107653668,LOC107730391,LOC107746981,LOC107559791,LOC107677846,LOC107555244,LOC107730385 coding upstream 95866 1246693 ~ 1261968 (+)
LOC122347479 LOC107730391,LOC107653668,LOC107677846,LOC107555244,LOC107746981,LOC107559791 coding upstream 107500 1245163 ~ 1250334 (+)
LOC122341978 NA coding upstream 310023 1043183 ~ 1047811 (+)
LOC122348945 LOC107718016,LOC107555266,LOC107568777,LOC107709315,LOC106575573,LOC108429863,LOC105889574 coding downstream 53471 1456086 ~ 1465285 (+)
runx1 runx1,LOC107555250,LOC107698911,LOC108429862,LOC107653683,LOC107571884 coding downstream 122492 1525107 ~ 1570888 (+)
LOC122347221 LOC107751081,LOC107698893,LOC107555241 coding downstream 172003 1574618 ~ 1583412 (+)
LOC122343461 NA coding downstream 181997 1584612 ~ 1591930 (+)
zgc:152904 zgc:152904,ncam2,LOC107698913,LOC107751079,LOC107721821 coding downstream 309427 1712042 ~ 1893196 (+)
G207 NA non-coding upstream 21489 1329595 ~ 1336345 (+)
G175 NA non-coding upstream 139100 1218065 ~ 1218734 (+)
G138 NA non-coding upstream 145691 1126766 ~ 1212143 (+)
G139 rap2ab,rap2a,LOC105911819,LOC106512668,LOC106582448,LOC105933629,LOC101166017,LOC103391592 non-coding upstream 206665 1148386 ~ 1151169 (+)
G162 kpnb3,ipo5,LOC107677849,LOC107653674,LOC107555240 non-coding upstream 229744 1126466 ~ 1128090 (+)
G227 NA non-coding downstream 64870 1467485 ~ 1468131 (+)
G270 NA non-coding downstream 82531 1485146 ~ 1485643 (+)
G273 LOC107698895,LOC107555251,LOC107751082 non-coding downstream 138707 1541322 ~ 1611176 (+)
G312 NA non-coding downstream 503037 1905652 ~ 1905963 (+)
G318 NA non-coding downstream 528042 1930657 ~ 1991767 (+)
G136 kpnb3,ipo5,LOC107730386,LOC107677849,LOC107555240,LOC107653674 other upstream 237113 1119719 ~ 1120721 (+)
LOC122341994 NA other upstream 908194 445940 ~ 449640 (+)
G10 NA other upstream 1179634 177716 ~ 178200 (+)
LOC122327253 NA other downstream 36425 1439040 ~ 1441666 (+)
cyyr1 cyyr1,LOC107751099,LOC107698919,LOC107593871 other downstream 783206 2185821 ~ 2192464 (+)
grtp1a grtp1,grtp1a,LOC107571994 other downstream 1081025 2483640 ~ 2489103 (+)
setdb2 LOC107570068 other downstream 1090957 2493572 ~ 2558527 (+)
pcid2 pcid2 other downstream 1108957 2511572 ~ 2518385 (+)

Expression


Co-expression Network