wdr3 (wdr3,LOC107712260,LOC107658238,LOC107569352,LOC107724477)


Basic Information

Item Value
gene id wdr3
gene name wdr3,LOC107712260,LOC107658238,LOC107569352,LOC107724477
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 22207557 ~ 22232004 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680455.1
GTGAACCCTAGCACGTGTGCTCTCAGTCCGCATGATGGAAGTAGTTGGCAGTGTGGATCTGTGAAAACAGCAGTGAATTAAGAGTGTTTTACTAGTTATATAAAAGGCTGGGAAAGTCTTCCTGCAGCTCGCCATGGGCTTGACTAAGCAGTACCTGCGCTACAACGCCTCTGCGGTTTTTGGAGTGATTGGCAGTCAGAAGGCCAACATTGCGTATGTGACCCTGAGAGGTGGAGAGAAGGGTCGATATGTGGCAGTGGGAGCCTGTGAGCATGTGTTCATATGGGATGTGCGCAAAGCTGAGAAGGTTCTAATCCTTCAGGGTAGTAAACACGACGCAACTTATCTCTGCCCCTCCCCCGATGGTGTTCACATAGCTGTGGGTTATGAAGATGGTTGTGTGCGCATATTCAGTCTGTTAAATGGGGAAAACAATGTCTCCTTCAATGGACACAAATCTGCTGTTACGAGCATCCAGTATGACGCACTGGGGGCACGACTGGTCACTGGCTCCAGGgACACAGATGTAATTGTGTGGGATGTGATAAACGAGTGTGGATTGTACAGACTGAAAGGACACAAAGATGCCATCACACAAGCTCTGTTCCTAAAGGACAGAAATCTGCTGGTCACAAGCTCAAAAGACAGTTTTGTAAAATGGTGGGACTTGGATACTCAGCACTGTTTTAAGACCATGGTGGGCCACCGCAGTGAGGTTTGGGGAATGGTTCTGTTGAATCAGGAGAACAGGCTGCTGACCGGCTCTGCTGACAGTGAGCTCCGAGGCTGGGACATTGAATACCTGGAGGAGGGTAAAGAAGTTGGAGAGCCGatggagaaaaaagggaaaagtcTTCTTGATGATGATGAAGCTGACAGTGGAGATGAAGGTCCTAATGAAGATCCAGAAGAGagaatccTCAGCTGTAAGAAAGCTGGTTCTGTCATAAGAGAAGGCAGAGACAGGGTTGTGTCCTTGACTGCTGATCCCAAAGCTAAAGTTGTGGCATGccatGGAGTTGATGGCTATCTGGAGCTCTTCAGTGTTGTTCCGGAGGAGGATGTACAgaagaaaatagagaaaaagctgaaaaaagcaagaaagaagGCAAAGTCTCAGGAAGGGGGCGGTGAAGCAGCAGATCCAGTAGTGGAGAGGAAACTGACAGATGAGCTTGAAAAGCTGACCAATATAAAAGCCTCTTCCAAAATCAGATCCGTGGACTGCATTCTGTTCCCTAATGGCGAGCTGAAAGTTGCTCTGCTGCTGCAGAATAACACAATAGAGACCTACAACCTGAATACCACAGAGAAGAACGCGACTGGAACCAAAACCAGCCGCCTCACGCTTGCAGGCCACCGTACCGATGCTAGAACTCTGGCCTTCAGCTCAGATAACATTGCTGTGCTCTCTGCCTCTGGAGACACGGTCAAAGTGTGGAACAGagccACTCTGCAGGTGATTCGAACCATGGCCTGCGAGTATGCTCTCTGCTCACTGTTTGTGCCTGGAGACAGACAGATTATCTTAGGAACAAAGAGTGGGAAGATTCAGATTTTTGATCTTGCGTCAGGAAGTCTGCTGGAGACTAGAGAAGCTCATGATGGAGCGCTGTGGTCTGTGTGCCTCTCTCCTGATCAGaGGGGTATAGTAACTGGAGGAGCAGACAAGACTGTGAAATTCTGGGATTTTGAGCTGATAAAGGACAAAGATTCCGGACCAAACAAGAGACTCACACTGAAGCACACTCGCATGCTGCAGTTGGATGAGGATGTGCTGTGTGTGCGCTACAGTCCTGATCAGAGGCTGCTGGCTGTCTCTCTGCTCGACTGCACTGTGAAGATCTTCTACACGGACACACTGAAGttcTTCTTGTCGCTGTATGGACACAAACTGCCCGTGCTGTGTCTGGATATTTCCCATGATAGTGCACTGATAGCCACTGGATCAGCAGACAGAAACGTGAAAGTGTGGGGTCTGGACTTCGGTGACTGCCATCGTTCAATGTTTGCACATGATGACAGTGTCATGTTCCTCCAGTTTGTTCCCAAAACCCATCTGTTCTTCACAGCGGGGAAGGACAGAAAGATCAAACAGTGGGACGCCGACAAGTTTGAGCACATCCAGACTCTAGAGGGTCATAAGGGTGAAGTTTGGTGTCTGGCCATCAGTCCCAGTGGAGACTATGTTGTGTCATCCTCTCACGATAAATCCCTCAGGCTTTGGGAGAGAACCAGAGAGCCTATTATtctggaggaggagaaagagatgGAAAGAGAAGCAGAATTTGAAGAATCTTTGGGAAAAGGAGAAGAGCCTGTGGTCCCTGGAGAGACTAAAGGAGAGGCAGAGCCGGCGGGGAAGAAGACTATAGAGACAGTCAAAGCTGCTGAACGTATAATGGAAGCCCTGGAGCTCTACAGAGAGGAGAGCAAGAAGCTGGAGGAGCACAAGGCTGCCTGTGAGGCAGCAGGGAAGCAGtTACCGCCTCCCAAGACCAACCCTATCCTTGTAGCCTTTGGTAATATTTCGCCCTCTCGTTATGTGCTAGATGTCATCAAGAAGGTTCGATCCAGTGAGCTAGAGGTTTCTCTGCTGGTGCTGCCGTTCCCGTATATCCCcgacctgctctctctcttcaacAGCTACGTCCAGCAGGGTCTGGAGGTGGAGCTGGTCTGTCGCTGCCTCTTCTTCCTACTCAGGATCCACTTTGGTCAGATCACCAGTAACCATATGCTGCTGTCCGTTATCGATGACTTAAGGACCAACACTATCTCCAAAGTGCGGGAGATCAGGGATGTTCTGGGCTTCAACAGCGCTGGGCTCCAGTTCCTGCAGCGAGAAATCGAGAGTAAAGAGGACGTGATGTTCTTCGCTGATGCTACAGATCGTTTtgaggagaagaagagaaagaggagaaagagggagagagccATTCTGACCATTACATAAATCACATCACATACGCTGAAAAATCAAGCTAATAAATGAGATGAAGATGCGCAGTGttcaccatgtttttataggCTTAAATGTAACGTGATTGTGTTATGTGTGATGTtcttttaataatgaaattGTCATTAAGCTAC

Function

symbol description
wdr3 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

NR:

description
WD repeat-containing protein 3-like

GO: NA

KEGG:

id description
K14556 DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680455.1 True 3096 mRNA 0.49 27 22207557 22232004

Neighbor

gene id symbol gene type direction distance location
hao2 hao2 coding downstream 321883 21870790 ~ 21885674 (-)
LOC103032289 LOC108431447,LOC108266533,LOC107724495,LOC107668845,LOC107569301,LOC107597372 coding downstream 337152 21861005 ~ 21870405 (-)
hsd3b1 LOC108431428 coding downstream 347952 21854267 ~ 21859605 (-)
pla1a pla1a coding downstream 353552 21840010 ~ 21854005 (-)
LOC103027332 LOC103027332,LOC108270784,LOC107712254,LOC107658208,LOC107597416,LOC108431426 coding downstream 391329 21810980 ~ 21816228 (-)
fam46c fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding upstream 83793 22315797 ~ 22320021 (-)
LOC103024581 NA coding upstream 280899 22512903 ~ 22559382 (-)
LOC103024947 LOC108266290,LOC108435066,LOC107714355,LOC107601612,LOC107657493 coding upstream 863226 23095230 ~ 23566845 (-)
LOC111194931 ttnb,LOC108435066,LOC107714355,LOC107601612,LOC107716993 coding upstream 1009336 23241340 ~ 23300036 (-)
LOC103024627 ttn,LOC108435065,LOC107657509,LOC107714399 coding upstream 1081712 23313716 ~ 23465516 (-)
G169407 NA non-coding downstream 20990 22186283 ~ 22186567 (-)
G169371 NA non-coding downstream 75760 22131550 ~ 22131797 (-)
G169369 NA non-coding downstream 79626 22115788 ~ 22127931 (-)
G169357 NA non-coding downstream 129972 22077361 ~ 22077585 (-)
G169355 NA non-coding downstream 164787 22042439 ~ 22042770 (-)
G169409 gdap2,LOC107569935,LOC107724478,LOC107658195,LOC107668848 non-coding upstream 4612 22236616 ~ 22242691 (-)
LOC111194929 NA non-coding upstream 44319 22276323 ~ 22280649 (-)
G169440 parp14,LOC107725230,LOC107695575,LOC107555066 non-coding upstream 273325 22505329 ~ 22507434 (-)
G169470 NA non-coding upstream 341958 22573962 ~ 22576789 (-)
G169487 NA non-coding upstream 441132 22673136 ~ 22673467 (-)
G169286 NA other downstream 384519 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 541434 21648617 ~ 21666123 (-)
G169171 mphosph8 other downstream 634147 21565128 ~ 21573410 (-)
LOC103045992 arhgef7a,LOC103045992,LOC108431465,LOC108266998,LOC107712280,LOC107597388,LOC103372297,LOC105913244,LOC107668898 other downstream 705768 21474662 ~ 21501789 (-)
LOC103045487 sox1a,LOC108431466,LOC107569013,LOC107668909,LOC107658211,LOC107597426 other downstream 844308 21351331 ~ 21363249 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other upstream 106435 22338439 ~ 22476272 (-)
G169567 NA other upstream 662764 22894768 ~ 22895432 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other upstream 2075646 24307650 ~ 24352908 (-)
LOC111194864 NA other upstream 3269936 25501940 ~ 25509416 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 3566506 25798510 ~ 25905616 (-)

Expression


Co-expression Network