LOC111194864


Basic Information

Item Value
gene id LOC111194864
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25501940 ~ 25509416 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230256
taGGGAGGCAAATTCTTTTTCAAAGCACTgtatatattagaaatatatcTCACGTGTAaacatatattcatttttagtttGGAAGGGTAGCGAGCATtacattaatacatattttttgtctctttctacAGGCCTACTTGTGGACGTTACATTTGGCTGACTAAAAATGAGCCTTATGCGAATGTTTGAATACAAACCTGATCAGATCCAATGATCAGACACGTAAAGTCCTTTGAAATTAGCAGTGAGGGCGTCGAAGAGCTCCGCTTCCTTCTGCACGGACCAGTTGGGGCAGGGAAATCCAGCATCATAAACACCATCAAAACTGTATTTGAAGGACATCACTACATCAACTGTCTGACTGCTTCAGCATTAACAGGCGAcagttttacaacaaagtTTGAGAAGTTCACTATCGGGCAGTTTGCCTTCTATGACGTCATGGGTCTGGAACAGGGAGAGTACAGAGGGGTACACCTTGATGACATCGTCAGTGCTGTGAAAGGTCACGTACCTGAAGACTACATATTTAAACCTAATGCTGCCATAGATAAATACAACACGCAATACATCAACGAACCAACTCTGAATGACCAGATTCACTGTCTAGTGAGTGTGATTCCAGCAGACAAAATCGccatgattgatgatgatgtcaTCGAGAAAATGAAGAAGATCAGAAAAGCAGCGAGTGACATAGGAGTTCCTCAAGTGCTTTTCATGACCAGAGTGGACCAGGTGTGCACGATGACCCAGCGAGACATTACTAAGATCTACCAGAGCAGGAAGATCAAGGAGAAGATGATGGAGTGCAGTAACAGAGTGGGTGTTCCACTGAACTGCATCTTCCCTGTGAAGAACTACAGTGAGGAGAACAAACCCAATGAGAAGCTGAACTGCCTGATGCTGGAAGCCTTCACTCAGATCGTGCATGCAGCTAATGACTACGTGAAGAAGAATtcaaagaaggagaaaaaaatagaagttGTTTCATGT
>XM_022680010.1
CACCTCTACATGCTCTTCCACTTGCCTCGGTCTCCTTAAATAACTAAACATAATATGAATGAAAGAAAATACAGCTAGCCTAAAACAGTTGAGGTAAACAGTACTGAACCACTACAATATAAAACCTGCACTCTCCAATATTACTGGCAGTATAAGCAGAACAAACTCCCAGCACTGCATCCAGCTACAAGATAAACAAACAGCTCATAGAGCCTATGCACTACAAACTAAGCTACAGAGGTGCACTCACAATAGATAACACACTAAAAGAGTTTACATGTCGTTTCTCTCtcacgcgcgcgcacacacaaacacacaccatgaGCAAGGGAAAGTCGTAAACTCCAGACTATCTCAGCAGCTCCACACTAACTCGGCGTCCTGAGCACACTTCTCAAAAATGCCGGCACACAACGGGTCTCGAGGGAGCTCAATATATTCGCGTTGGTTTATTAATCTGCGCTGGCGCCTCCTACTGGGTCCTAATGCCCCTCGCCTGTTTCTCTGCACTGGGATTATGTCCTACAACCTACACTGGTTTGAGGGCATTGCTGATGACTGTGAAAAATGTTGGTAACCAAGATATTTTTTTGTTCCTCTTAGATCAGATCCAATGATCAGACACGTAAAGTCCTTTGAAATTAGCAGTGAGGGCGTCGAAGAGCTCCGCTTCCTTCTGCACGGACCAGTTGGGGCAGGGAAATCCAGCATCATAAACACCATCAAAACTGTATTTGAAGGACATCACTACATCAACTGTCTGACTGCTTCAGCATTAACAGGCGAcagttttacaacaaagtTTGAGAAGTTCACTATCGGGCAGTTTGCCTTCTATGACGTCATGGGTCTGGAACAGGGAGAGTACAGAGGGGTACACCTTGATGACATCGTCAGTGCTGTGAAAGGTCACGTACCTGAAGACTACATATTTAAACCTAATGCTGCCATAGATAAATACAACACGCAATACATCAACGAACCAACTCTGAATGACCAGATTCACTGTCTAGTGAGTGTGATTCCAGCAGACAAAATCGccatgattgatgatgatgtcaTCGAGAAAATGAAGAAGATCAGAAAAGCAGCGAGTGACATAGGAGTTCCTCAAGTGCTTTTCATGACCAGAGTGGACCAGGTGTGCACGATGACCCAGCGAGACATTACTAAGATCTACCAGAGCAGGAAGATCAAGGAGAAGATGATGGAGTGCAGTAACAGAGTGGGTGTTCCACTGAACTGCATCTTCCCTGTGAAGAACTACAGTGAGGAGAACAAACCCAATGAGAAGCTGAACTGCCTGATGCTGGAAGCCTTCACTCAGATCGTGCATGCAGCTAATGACTACGTGAAGAAGAATtcaaagaaggagaaaaaaatagaagttGTTTCATGTTAAAATTCTATAAAGAAACATGCAAGACAAAAGTGTAGATCTGTTAAAATATTGGTAGGATGTTTGATTGTAGTCATGTTAGACAGATTGAGAAATGTCATATCTTAAAACATGTCATGCATATATGGACACACcttgaattcagtgttttttattatttttaaatgcacactgtagattattactaaagccatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230256 False 996 TUCP 0.42 6 25502135 25509416
XM_022680010.1 True 1594 mRNA 0.43 5 25501940 25506295

Neighbor

gene id symbol gene type direction distance location
LOC111194961 NA coding downstream 6201 25491361 ~ 25495739 (-)
LOC111188175 NA coding downstream 12283 25476927 ~ 25489657 (-)
arhgap15 arhgap15 coding downstream 1302983 24110733 ~ 24198957 (-)
LOC103024947 LOC108266290,LOC108435066,LOC107714355,LOC107601612,LOC107657493 coding downstream 1935095 23095230 ~ 23566845 (-)
LOC103024627 ttn,LOC108435065,LOC107657509,LOC107714399 coding downstream 2036424 23313716 ~ 23465516 (-)
LOC103035913 LOC108430488,LOC108266232 coding upstream 175651 25685067 ~ 25720774 (-)
LOC103035604 NA coding upstream 222398 25731814 ~ 25754591 (-)
LOC111194933 NA coding upstream 264910 25774326 ~ 25781001 (-)
LOC103035301 NA coding upstream 520062 26029478 ~ 26031385 (-)
LOC103038930 NA coding upstream 1128160 26637576 ~ 26647990 (-)
G170045 NA non-coding downstream 75745 25425786 ~ 25426195 (-)
G170042 NA non-coding downstream 113474 25388090 ~ 25388466 (-)
G170038 NA non-coding downstream 115225 25386403 ~ 25386715 (-)
G170025 NA non-coding downstream 214328 25214731 ~ 25287612 (-)
G170015 NA non-coding downstream 557317 24944362 ~ 24944623 (-)
G170067 NA non-coding upstream 5580 25514996 ~ 25515431 (-)
G170146 NA non-coding upstream 287284 25796700 ~ 25811803 (-)
G170170 NA non-coding upstream 356701 25866117 ~ 25869101 (-)
G170198 NA non-coding upstream 563305 26072721 ~ 26073175 (-)
G170209 NA non-coding upstream 627359 26136775 ~ 26137154 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 1149032 24307650 ~ 24352908 (-)
G169567 NA other downstream 2606508 22894768 ~ 22895432 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other downstream 3025668 22338439 ~ 22476272 (-)
G169286 NA other downstream 3678902 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 3835817 21648617 ~ 21666123 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 289094 25798510 ~ 25905616 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other upstream 717041 26226457 ~ 26252266 (-)
LOC111194963 NA other upstream 2390775 27900191 ~ 27902899 (-)
G170854 NA other upstream 3176634 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 6386416 31895832 ~ 31904168 (-)

Expression


Co-expression Network