LOC111194963


Basic Information

Item Value
gene id LOC111194963
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27900191 ~ 27902899 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230949
AGCTCAGATAGCTGCATTAAGGGAGGAAGAAGAGCAGAAGAATCATATGATGAAGGAGAAGATTGAGAAGATGAGCAGAGAGATATCAGCACTTTCAGACACTATCAGAGCCATAGAAGAGGAGATGGGAGCTGAAGATATTTCATTCCTACAGAATTACAAGACCATTGTGAACAGAACTCAGTGTACGCTGCAGGATCCAGAGAGGCTTTCAGGAGCTCTGCTCAATGTGGGGAAACATCTGGCCAACCTGAAGTTCACAGTCTGGAAGAAGATGCAGGAGGTTGTTCAGTTTACTCCTGTTACTCTGGACCCCAACACTGCTCATCCTGAACTCATCCTCTCTGATGACCTGACCAGTATGAGATTCAATTCTGAGAAACAGCAGCTTCCTGATAATCCAGAGAGATTTGATACTTTCTGTGTTGTGGGTTCTGAGGGCTTTAACTCAGGGACACGCTGCTGGGATGTTGAAGTTGGTGACAATATGGACTGGTTACTGGGAGTGATGGCAGAATCTGCTGAGAGGAAGGGGGATATAACATCCAGGAGTGGAGTGTGGTTTGTGTGGTACAACAGTGGGACATATAAAGCCCGTTCTGCACCACAGGCAGCCGCTCTGTTCTCAGTATCACAGAAAGTGCAGAGGGTCAGAGTTCAGCTGGACTGGGTCGGAGGAAAACTCTCATTTTCTGATTCTCtcaccaacacacacttacacaccatcacacacacattcactgagAGAGTGTTTCCATTGTTTTGTACTTATACCAACTGTCCTCTTTCTATCA
>XM_022680673.1
ATGAAGGAGAAGATTGAGAAGATGAGCAGAGAGATATCAGCACTTTCAGACACTATCAGAGCCATAGAAGAGGAGATGGGAGCTGAAGATATTTCATTCCTACAGGTGGGCACAGTTCACTGCACTGTATGTTCTGAATGTACTTCCAGAACTCAGTGTACGCTGCAGGATCCAGAGAGGCTTTCAGGAGCTCTGCTCAATGTGGGGAAACATCTGGCCAACCTGAAGTTCACAGTCTGGAAGAAGATGCAGGAGGTTGTTCAGTTTACTCCTGTTACTCTGGACCCCAACACTGCTCATCCTGAACTCATCCTCTCTGATGACCTGACCAGTATGAGATTCAATTCTGAGAAACAGCAGCTTCCTGATAATCCAGAGAGATTTGATACTTTCTGTGTTGTGGGTTCTGAGGGCTTTAACTCAGGGACACGCTGCTGGGATGTTGAAGTTGGTGACAATATGGACTGGTTACTGGGAGTGATGGCAGAATCTGCTGAGAGGAAGGGGGATATAACATCCAGGAGTGGAGTGTGGTTTGTGTGGTACAACAGTGGGACATATAAAGCCCGTTCTGCACCACAGGCAGCCGCTCTGTTCTCAGTATCACAGAAAGTGCAGAGGGTCAGAGTTCAGCTGGACTGGGTCGGAGGAAAACTCTCATTTTCTGATTCTCtcaccaacacacacttacacaccatcacacacacattcactgagAGAGTGTTTCCATTGTTTTGTACTTATACCAACTGTCCTCTTTCTATCAGTCCAGTTAAGTTGAGTTAGTGGATCAGTGATTTTGTTGAGTAAGAGTTgattctatgtgtgtgtgtgtgaattaacacaaaaaatatgtatttgtacTTCTATTCAGTGCTATGCGCTAGATTTACAAACACTTACCATAATTACATTCATGCTGTTtaatatgctgtaaataaaaGATATTTGGCCAACTTCCACAAACTGTTCTAGCCCTAATATATGAATCAGCAAAAAAGAATCCAGATTTACACCAAGATCCAGATTTTAACAGTAGTTTTTGGTTGCAGaataaaattaagctaaaagaaaacactacacctttatttttaaccatattttttttttgtaaaagtaaaACAGTGCATTGCCTAAAACAGAGCTTTGGAGACACCATTGCCCTCTCTTTATCTCATACCAACAAACTTAGTAAAATCCTTTCTGTACAATTTGATTTTATGTCATTCATGACTGTGGTCATGTGGTAAAATGACAATTCTGCACTTAAATCGAGTAGTACCAGAAGAGATGCATTAACAAATACGAAGTCAGTAAATTTAAACAGCAAATTTGaaaatatacaaacattttttttaaatcttatgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230949 False 794 TUCP 0.46 4 27900794 27902899
XM_022680673.1 True 1369 mRNA 0.40 3 27900191 27902850

Neighbor

gene id symbol gene type direction distance location
LOC103028198 LOC103028198 coding downstream 5304 27889747 ~ 27894887 (-)
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding downstream 56638 27836324 ~ 27843553 (-)
LOC103030092 kpna3,LOC108430517,LOC103046682,LOC107676880 coding downstream 64718 27824339 ~ 27835473 (-)
gtpbp8 gtpbp8 coding downstream 76828 27815809 ~ 27823363 (-)
slc10a2 slc10a2 coding downstream 84431 27810358 ~ 27815760 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding upstream 194560 28097459 ~ 28153647 (-)
st6gal2 st6gal2 coding upstream 278105 28181004 ~ 28249266 (-)
pdzk1 NA coding upstream 409600 28312499 ~ 28327425 (-)
LOC103034135 irs2 coding upstream 1159019 29061918 ~ 29079952 (-)
col4a1 col4a1,col4a5 coding upstream 1266787 29169686 ~ 29235749 (-)
G170611 rnaseh2b,LOC107600410 non-coding downstream 10514 27882680 ~ 27889677 (-)
G170603 NA non-coding downstream 37639 27862156 ~ 27862552 (-)
G170582 trim13 non-coding downstream 49000 27845972 ~ 27851191 (-)
LOC111194936 NA non-coding downstream 279404 27617687 ~ 27620787 (-)
G170549 gtf2e1,LOC107733656,LOC107738514 non-coding downstream 402552 27496098 ~ 27497639 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding upstream 272436 28175335 ~ 28175654 (-)
G170658 tmtops2b,LOC108431481,LOC107559924,LOC107748531,LOC107738308 non-coding upstream 276075 28178974 ~ 28179208 (-)
G170661 NA non-coding upstream 285589 28188488 ~ 28191125 (-)
G170685 NA non-coding upstream 524578 28427477 ~ 28427687 (-)
G170858 NA non-coding upstream 890373 28793272 ~ 28793875 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 1647925 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1994575 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 2390775 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 3547283 24307650 ~ 24352908 (-)
G169567 NA other downstream 5004759 22894768 ~ 22895432 (-)
G170854 NA other upstream 783151 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 3992933 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 4855608 32758507 ~ 32776018 (-)
G171553 NA other upstream 5271154 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 5311423 33214322 ~ 33235878 (-)

Expression


Co-expression Network