LOC111194936


Basic Information

Item Value
gene id LOC111194936
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27617687 ~ 27620787 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230881
AAGACTGTGATGCAGAAGAAGCTACAAGATCTCAGTTACTGAAACACTACAGGGAGCACTACAGAGCATTTGAACTGCAGTCATCTTCAGCAAGAGAAATTGTGTTGGTTGAGTTAAGTGAACTGACGGACAGCTACCCTTTGGTTGACTACAAGTGTGGAATCCACCGAATGGTCTCCCTTAAAAGATACATACACACATCTGATTAACCTGTTGACCAGTATGTCTGCTTCAGCTGTGCTTCGCATCATCCTAGGGCAAGATGACTCCACTAAATTAACCCTGCCCTTTGGAATACCAGACTCTGTTGAGGAACTTAAAAGTGAGATAAAGAGACAATGTGATGTGTCAGGAGACTTTAGGATGCAGTACAAGGACATTGATTTTGATG
>XR_002651381.1
ATGTAAGACTGTGATGCAGAAGAAGCTACAAGATCTCAGTTACTGAAACACTACAGGGAGCACTACAGAGCATTTGAACTGCAGTCATCTTCAGCAAGAGAAATTGTGTTGGTTGAGTTAAGTGAACTGACGGACAGCTACCCTTTGGTTGACTACAAGTGTGGAATCCACCGAATGGTCTCCCTTAAAAGATACATACACACATCTGATTAACCTGTTGACCAGTATGTCTGCTTCAGCTGTGCTTCGCATCATCCTAGGGCAAGATGACTCCACTAAATTAACCCTGCCCTTTGGAATACCAGACTCTGTTGAGGAACTTAAAAGTGAGATAAAGAGACAATGTGATGTGTCAGGAGACTTTAGGATGCAGTACAAGGACATTGATTTTGATGAGTTTTTTAAACTTGACCTCCACTTCAGACATTCAAAACAAGGCAACACTCAAAGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230881 False 391 lncRNA 0.43 3 27617745 27620783
XR_002651381.1 True 453 lncRNA 0.42 3 27617687 27620787

Neighbor

gene id symbol gene type direction distance location
lcmt2 lcmt2 coding downstream 122170 27484506 ~ 27495517 (-)
LOC111194935 NA coding downstream 146317 27470248 ~ 27471370 (-)
LOC103034209 rab5b,LOC108430508,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108266395 coding downstream 153734 27448518 ~ 27463953 (-)
armc8 armc8 coding downstream 181532 27406353 ~ 27436155 (-)
idh1 idh1,LOC107663883 coding downstream 451425 27148571 ~ 27166262 (-)
LOC107197926 NA coding upstream 185101 27805888 ~ 27808808 (-)
slc10a2 slc10a2 coding upstream 189571 27810358 ~ 27815760 (-)
gtpbp8 gtpbp8 coding upstream 195022 27815809 ~ 27823363 (-)
LOC103030092 kpna3,LOC108430517,LOC103046682,LOC107676880 coding upstream 203552 27824339 ~ 27835473 (-)
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding upstream 215537 27836324 ~ 27843553 (-)
G170549 gtf2e1,LOC107733656,LOC107738514 non-coding downstream 120048 27496098 ~ 27497639 (-)
G170548 NA non-coding downstream 137265 27479901 ~ 27480422 (-)
G170545 NA non-coding downstream 141552 27473202 ~ 27476135 (-)
LOC111194934 NA non-coding downstream 236173 27378534 ~ 27381514 (-)
G170506 NA non-coding downstream 472978 27061004 ~ 27144709 (-)
G170582 trim13 non-coding upstream 225185 27845972 ~ 27851191 (-)
G170603 NA non-coding upstream 241369 27862156 ~ 27862552 (-)
G170611 rnaseh2b,LOC107600410 non-coding upstream 261893 27882680 ~ 27889677 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding upstream 554548 28175335 ~ 28175654 (-)
G170658 tmtops2b,LOC108431481,LOC107559924,LOC107748531,LOC107738308 non-coding upstream 558187 28178974 ~ 28179208 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 1365421 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1712071 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 2108271 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 3264779 24307650 ~ 24352908 (-)
G169567 NA other downstream 4722255 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 279404 27900191 ~ 27902899 (-)
G170854 NA other upstream 1065263 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 4275045 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 5137720 32758507 ~ 32776018 (-)
G171553 NA other upstream 5553266 33174053 ~ 33176284 (-)

Expression


Co-expression Network