G170548


Basic Information

Item Value
gene id G170548
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27479901 ~ 27480422 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230862
ACGAACCTAAATATATACAGAGCACAGACTGAAAAAGGATGAGCAGGAATTGCTTGTTTCAGAAGAGGGTCAGAAGATGTAGGTCATTTTTAATTACAATAGAACCTAAATGAAGTACATAGCCTGATCACTGTAGGAGAGAAATCAGTAACCGCCAGAATACAGAAgacaaagcattttttttattgttttcacactaaatctgttcccttaaatgacaCATAATACAATACGGTGCTCTACTGGAAGTCCGCTGGATTTATTTGTACTCTtgaatacaaataaaagtcaacaATATGCAGAAAACAATGAGGaacatctacaaaaaaaatgaagacgACCCTTTAATGCGGTGTTGCATATTGATCACAGAAACcagtggaaagaaaaaaaattctacaGCAGCAGATTCTCAAATCTGCATCTGGAGTCTAATATTATCCCTGCATACTGAAAAAGATAAGTTCACAGTGCATGGTATCAAATGATATCTTACTGAAATCGGtgaaatttaactttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230862 True 522 lncRNA 0.35 1 27479901 27480422

Neighbor

gene id symbol gene type direction distance location
LOC111194935 NA coding downstream 8531 27470248 ~ 27471370 (-)
LOC103034209 rab5b,LOC108430508,LOC107551955,LOC107738511,LOC107598172,LOC107698530,LOC108266395 coding downstream 15948 27448518 ~ 27463953 (-)
armc8 armc8 coding downstream 43746 27406353 ~ 27436155 (-)
idh1 idh1,LOC107663883 coding downstream 313639 27148571 ~ 27166262 (-)
plekhm3 plekhm3,LOC107733641,LOC107551948,LOC107663884 coding downstream 338692 27087399 ~ 27141209 (-)
lcmt2 lcmt2 coding upstream 4084 27484506 ~ 27495517 (-)
LOC107197926 NA coding upstream 325466 27805888 ~ 27808808 (-)
slc10a2 slc10a2 coding upstream 329936 27810358 ~ 27815760 (-)
gtpbp8 gtpbp8 coding upstream 335387 27815809 ~ 27823363 (-)
LOC103030092 kpna3,LOC108430517,LOC103046682,LOC107676880 coding upstream 343917 27824339 ~ 27835473 (-)
G170545 NA non-coding downstream 3766 27473202 ~ 27476135 (-)
LOC111194934 NA non-coding downstream 98387 27378534 ~ 27381514 (-)
G170506 NA non-coding downstream 335192 27061004 ~ 27144709 (-)
G170508 NA non-coding downstream 386034 27078539 ~ 27093867 (-)
G170501 ccnyl1,LOC107733650,LOC107663902 non-coding downstream 427294 27048035 ~ 27052607 (-)
G170549 gtf2e1,LOC107733656,LOC107738514 non-coding upstream 15676 27496098 ~ 27497639 (-)
LOC111194936 NA non-coding upstream 137265 27617687 ~ 27620787 (-)
G170582 trim13 non-coding upstream 365550 27845972 ~ 27851191 (-)
G170603 NA non-coding upstream 381734 27862156 ~ 27862552 (-)
G170611 rnaseh2b,LOC107600410 non-coding upstream 402258 27882680 ~ 27889677 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 1227635 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1574285 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 1970485 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 3126993 24307650 ~ 24352908 (-)
G169567 NA other downstream 4584469 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 419769 27900191 ~ 27902899 (-)
G170854 NA other upstream 1205628 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 4415410 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 5278085 32758507 ~ 32776018 (-)
G171553 NA other upstream 5693631 33174053 ~ 33176284 (-)

Expression


Co-expression Network