LOC103030092 (kpna3,LOC108430517,LOC103046682,LOC107676880)


Basic Information

Item Value
gene id LOC103030092
gene name kpna3,LOC108430517,LOC103046682,LOC107676880
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 27824339 ~ 27835473 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260410.3
CGGTCCACCCTCGTTAGATGGACCTTCTCGATTTGAGGAACACACACCGTGCAGCTTTGAGTGCTGCAGCCATGGCAGAAAACGGAGCATTGGAAAACCACCgtataaaaagctttaaaaacaaaGGACGTGATGCAGAGGCAATGAGAAGACATCGGAATGAAGTATCCGTAGAGCTGAGAAAGAATAAAAGAGATGAGCACCTGCTGAAGAAAAGGAATGTTCCACAGAGTGAGAGTGCAGATGACTCTGATGTAGACAATGATCTTAAAGGACAAAATTTAACCCTGGAAACCATCTTACAGAATGCCTCCAGTAACAACAATGTGTTGCAGCTCAGTGCAGTACAAGCAGCCAGGAAGTTGCTGTCCAGTGATAGAAACCCTCCTATAGATGATCTGGTTCGATCTGGAATCCTGCCCGTTCTGGTCAACTGCCTGGATAGAGatgatcaCCCTTCTCTCCAGTTTGAGGCAGCCTGGGCTCTTACGAATATTGCTTCTGGGACATCAGCTCAGACACAGGCCGTGGTCCAGTCCAATGCAGTGCCACTGTTCCTGAGACTGCTCCACTCCCCACACCAGAATGTGTGTGAGCAGGCAGTGTGGGCGCTGGGCAACATCATTGgaGATGGGCCTCAGTGCAGGGATTATGTCATCTCTCTGGGTGTAGTAAAGCCTCTGCTGTCCTTCATCTGCCCTACCGTACCGTTGTCCTTTCTACGCAATGTCACCTGGGTCATCGTCAACCTCTGCCGCAACAAAGACCCACCACCACCCATGGAGACAGTgcaggagATTCTTCCCGCATTGAGTGTCCTAATATACCACACTGATATTAATATTCTGGTGgacacagtgtgggcagtgtcatATCTGACAGACGGAGGTAACGAGCAGATCCAAATGGTGATTGAGTCTGGAGTCGTGCCTTTCCTAGTCCCTCTGCTCAGTCATCAGGAGGTTAAAGTTCAGACGGCGGCCCTGAGGGCGGTGGGGAACATTGTCACAGGAACAGACGAACAGACGCAAGCAGTTCTCAACTGTGATGTTCTCTCACACTTCCCCTTGCTGCTCACACACCCCAAGGACAAAATCAACAAGGAGGCAGTATGGTTCCTGTCCAATATCACAGCAGGAAACCAGCAGCAAGTCCAAGCTGTGATTGATGCTGGCCTCATCCCTCTGATCATACACCAGTTAGCAAAGGGTGACTTCGGGACTCAGAAAGAGGCAGCATGGGCCATCAGCAACCTCACTATTAGTGGCAAGAAAGAGCAGGTGGAGTACCTGGTGCAGCAGGGCGTGGTGGCTCCTCTGTGCGATTTGCTGGTGGTGCGAGATGCGCAGGTGGTGCAGGTGGTTCTGGATGGCTTGAAGAACATCCTGCTGATGGCAGGAGAGCAGGCCAGCACTGTTTCCAACATCATCGAGGAGTGTGGAGGTTTGGAGAAGATTGAGAACCTGCAGCAGCACGAGAATGAGTACATCTACAAGCTGGCCTTCGAGATCATAGACCAGTACTTCTCAGGAGACGACATTGATGAGGACTTGAGTCTGGTCCCTGAGGCAGCGCAGGGAGGAACATTTACCTTTAATCCTCCTGGTGATCTGCAGACCAACGACTTCAAGTTCTGAAGACCGTAAACACACAGGCACGCATAGTGGGGTATATAGGATACTTCAGCTCGCCTTCCACGTTATAAAATATCAAACGATTTTCGCTTTTTTCAGGTGGTCTTTCATGCACACACATCATGCAAATATTTGGTGTTTCTGACCTTGTGGCCATCATGCGCTGTATTTCTGCTCTGGGatggacttttatttttatttttactttttctttttttaatcgtTTAGCTAAGACATGGGTTTTatgtataaaatgaaaaaaattgtgtatttctgagttaaatttaaaacactttagcTATAGAGGACCAATCAGCAAAATGAGGAATTtcctaaatatatttaatttgttttatatcaaATTGCACTGAAATGACTcttgtgtgcatttgtgttttCAGAGGACTTCTTTTTGTCACTTTTTATATGAGAAAAACTGTCCTTACAAGCCTTACATTaataacttattatttttatttcattttattcagtttGTGTAAGGAATgcatattttcatgtttttcatgagcgtgtatatacatatatattgtttgCAGGCTCCCACAAACACTCATATGCACATGTAGTATGGCATACAAACGCAttatttttcatgcatttgtgtgtgtgagaaattttattattatccagATTGAGCCacttcaaacatatatttttcagtCTTGTATCAGACAGTGATACGAGCTTAAATCCATTGCAAGATTTTTCCTTGCAGCAAcgaaattcattcatttttgtttttgttacttGTTCTAAAATTATGTATTTGGGTTAACTCTAGTCTGAACTCTTTAACTTGGCTCCTCATTGTTGCTCAAGtcttgtgctgaataaaagCAAGATTGAGTCGCTTTTCACAGCAGTGTATTCACTTGTGATGTAAAATAGGGATGGACAATACCATGTTTTCCTAATTAGAGTTGTAATGATTCATAAATTATTTCAGAATTTGATTTAGTATGATACTGTGGTGTCTCAGCAattctgtaaaatattaaataaaattttgtaTCCTCTA

Function

symbol description
kpna3 Predicted to enable nuclear import signal receptor activity and nuclear localization sequence binding activity. Predicted to be involved in NLS-bearing protein import into nucleus. Predicted to act upstream of or within protein import into nucleus. Predicted to be located in cytoplasm. Predicted to be active in nucleoplasm. Orthologous to human KPNA3 (karyopherin subunit alpha 3).

NR:

description
PREDICTED: importin subunit alpha-4-like isoform X1

GO:

id name namespace
GO:0006606 protein import into nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K23583 KPNA3_4; importin subunit alpha-4/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260410.3 True 2673 mRNA 0.43 17 27824339 27835473

Neighbor

gene id symbol gene type direction distance location
gtpbp8 gtpbp8 coding downstream 976 27815809 ~ 27823363 (-)
slc10a2 slc10a2 coding downstream 8579 27810358 ~ 27815760 (-)
LOC107197926 NA coding downstream 15531 27805888 ~ 27808808 (-)
lcmt2 lcmt2 coding downstream 328822 27484506 ~ 27495517 (-)
LOC111194935 NA coding downstream 352969 27470248 ~ 27471370 (-)
LOC103030840 spryd7,LOC108430519,LOC107600395,LOC108266652 coding upstream 851 27836324 ~ 27843553 (-)
LOC103028198 LOC103028198 coding upstream 54274 27889747 ~ 27894887 (-)
uxs1 uxs1,LOC107688726,LOC107676432,LOC107551074 coding upstream 261986 28097459 ~ 28153647 (-)
st6gal2 st6gal2 coding upstream 345531 28181004 ~ 28249266 (-)
pdzk1 NA coding upstream 477026 28312499 ~ 28327425 (-)
LOC111194936 NA non-coding downstream 203552 27617687 ~ 27620787 (-)
G170549 gtf2e1,LOC107733656,LOC107738514 non-coding downstream 326700 27496098 ~ 27497639 (-)
G170548 NA non-coding downstream 343917 27479901 ~ 27480422 (-)
G170545 NA non-coding downstream 348204 27473202 ~ 27476135 (-)
LOC111194934 NA non-coding downstream 442825 27378534 ~ 27381514 (-)
G170582 trim13 non-coding upstream 10499 27845972 ~ 27851191 (-)
G170603 NA non-coding upstream 26683 27862156 ~ 27862552 (-)
G170611 rnaseh2b,LOC107600410 non-coding upstream 47207 27882680 ~ 27889677 (-)
G170657 tmtops2b,LOC108431481,LOC107716802,LOC107602912,LOC108266815,LOC107096900,LOC107688724,LOC107551048 non-coding upstream 339862 28175335 ~ 28175654 (-)
G170658 tmtops2b,LOC108431481,LOC107559924,LOC107748531,LOC107738308 non-coding upstream 343501 28178974 ~ 28179208 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 1572073 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 1918723 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 2314923 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 3471431 24307650 ~ 24352908 (-)
G169567 NA other downstream 4928907 22894768 ~ 22895432 (-)
LOC111194963 NA other upstream 64718 27900191 ~ 27902899 (-)
G170854 NA other upstream 850577 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 4060359 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 4923034 32758507 ~ 32776018 (-)
G171553 NA other upstream 5338580 33174053 ~ 33176284 (-)

Expression


Co-expression Network