G169980 (arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355)


Basic Information

Item Value
gene id G169980
gene name arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 24307650 ~ 24352908 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU230159
CCAATTTGCAAGACAAGGGGGGGAATTAACCACAATATCTAATACCACCTAACTATcagacacacacccacacatacacacacacacaccaatcttACCTGTGTCTTCCGATTTCCTTTATGTACCAATGCGTTACTGTAGGCATTCACCCGACTCATTCATCCGTAGTACTGTCTAAAGCAAACAGTCCAATTTACACTGCTGAATAAAATTAGTCTTTTACGCACATCGGCCACCGTTTCACCTGACTGTTACAGTGGGCAGTGAACTGCATGAATAACAACATAAAACGGGACATATTGcaataattaatatttgtaGGGAACGAATGTATTACGTGAAGCAGCACAGGTCATTTAGGAGCTCTCCTTGGTTTCAAAGTTGATGATGTACTTATACAGACACATACTTAACCAACCTTCCCAACCTACCAAGCCCTGTGTCTGCATTAGTTGCCTTTCTATATTGGAAATAATCTGCCCCTTTCCAACgaataactaaatataaagtatattttccCTTTTAGGAGAAAGCAGTTAATTTCTTTACTACTGCAAATAATGGTCTATGAGGCAACAGAAGTCtaatataaagcacattttagtattttaatgtaaaaaaaaaaaaaaggtttttaaattcataagaaaatgaataattattacTAATTTTTTCCCCATAACTGAGAAATGGTTTATACATAGTTATTCATTAGAAGGGCTCAATTGATGGATGGCTTAAAGTTACATAACTGGATCCAACTGTGCTTAACTTTCCACCAAAATCGAGGGGAGCTCCCAAACACCTTGCACAAATTCAAGGGTTtagcacaagcacacacacacatacttgcacattctctctctctctcacacacaaacacacacaggcacgcacacactcacacacacttctctctgCATTAGCATTTTAGTAACAACAAAACGGAAAGCCCTGAAACTTGGGGAGGGGAAAAAGCTTCCTATACAGCCGTGGCAGaattgaacataaaaaaaaacagctaaaactgaAATCATCAGCCAGTCTGTGGAGGTGGCAGCAAAGTTCAGCCTCAAAGTGGTGCAGATTTTCCTCAACGGAAGGGTTAGGGAAGAGGGGGCAGAGTTTTTTCCGAGCCGCTAGAGCTGGATTCTCTCCGAGACTCCCAGAGCTTCACTTCAAAATGAAGTTCTCTTCCCGAAGTGTAGAGAGAAGGAAGgtagaggaggagaagaaagacAAGGGGAGAGAACAGGAGAGCAATCAGTCCGTTGCtttgagagagaaggagaggcgGGGTCGGGACTTGCCCTTTCCCAAAATCATCTTCTGCTCTTCCTTTTGCTGTTTCTGCCTCTCCTGCTCGAGTTTCATTCGCTCCTCATGGATCTTGCGCTGCTCCTCCACTATACGCAGCTGATCCTCAGcCAGTTTAGCCTGAGCATCAGCAAtctttctgttgttttcttCCAAAATTTTCTCCAGTTCCTCCCTTTTGGATTTTTCTTCTTCCTCGCGGGCTTTCTGAGCGCTGAGCTCAGCCTGCCTCTGCCTCTCCAGCTCCTGCAGCAGCTGCGCCTCCATTATGCGTTTTGCCTCCTCCACGCGGCGCAGCACCTCATGCTCGATCTCGTCTCGCCGCTTTTCCAGTTCCTCTTCCACTCGCCGGGCCACCATCTCCTCCACCCGCCGCGCCGTCTCCTCCTCAATCAACCGCTCCTCGATCTCCTGCTGACGGCTGGAGGGGACACAGAGGGAGAGACTGTACATTT
>TU230161
cacacacacacaggcactcacacacacttctctctgCATTAGCATTTTAGTAACAACAAAACGGAAAGCCCTGAAACTTGGGGAGGGGAAAAAGCTTCCTATACAGCCGTGGCAGaattgaacataaaaaaaaacagctaaaactgaAATCATCAGCCAGTCTGTGGAGGTGGCAGCAAAGTTCAGCCTCAAAGTGGTGCAGATTTTCCTCAACGGAAGGGTTAGGGAAGAGGGGGCAGAGTTTTTTCCGAGCCGCTAGAGCTGGATTCTCTCCGAGACTCCCAGAGCTTCACTTCAAAATGAAGTTCTCTTCCCGAAGTGTAGAGAGAAGGAAGgtagaggaggagaagaaagacAAGGGGAGAGAACAGGAGAGCAATCAGTCCGTTGCtttgagagagaaggagaggcgGGggcggggcttcccc

Function

symbol description
arglu1a Predicted to be active in mitochondrion and nucleoplasm. Is expressed in brain. Orthologous to human ARGLU1 (arginine and glutamate rich 1).
arglu1 Enables cadherin binding activity. Located in cytosol; mitochondrion; and nucleoplasm.

NR:

description
arginine and glutamate-rich protein 1-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230159 True 1772 TUCP 0.45 3 24312583 24324505
TU230161 False 428 lncRNA 0.49 3 24307650 24352908

Neighbor

gene id symbol gene type direction distance location
arhgap15 arhgap15 coding downstream 108693 24110733 ~ 24198957 (-)
LOC103024947 LOC108266290,LOC108435066,LOC107714355,LOC107601612,LOC107657493 coding downstream 740805 23095230 ~ 23566845 (-)
LOC103024627 ttn,LOC108435065,LOC107657509,LOC107714399 coding downstream 842134 23313716 ~ 23465516 (-)
LOC111194931 ttnb,LOC108435066,LOC107714355,LOC107601612,LOC107716993 coding downstream 1007614 23241340 ~ 23300036 (-)
LOC103024581 NA coding downstream 1748268 22512903 ~ 22559382 (-)
LOC111188175 NA coding upstream 1124019 25476927 ~ 25489657 (-)
LOC111194961 NA coding upstream 1138453 25491361 ~ 25495739 (-)
LOC103035913 LOC108430488,LOC108266232 coding upstream 1332159 25685067 ~ 25720774 (-)
LOC103035604 NA coding upstream 1378906 25731814 ~ 25754591 (-)
LOC111194933 NA coding upstream 1421418 25774326 ~ 25781001 (-)
G169963 NA non-coding downstream 170583 24106465 ~ 24137067 (-)
G169900 NA non-coding downstream 402991 23904451 ~ 23904659 (-)
G169895 NA non-coding downstream 580347 23726925 ~ 23727303 (-)
G169865 NA non-coding downstream 815223 23490979 ~ 23492427 (-)
G169869 NA non-coding downstream 999315 23259329 ~ 23308335 (-)
G169987 NA non-coding upstream 258130 24611038 ~ 24611330 (-)
G169989 NA non-coding upstream 294638 24647546 ~ 24647894 (-)
G169997 NA non-coding upstream 412822 24765730 ~ 24766240 (-)
G169999 NA non-coding upstream 418058 24770966 ~ 24771170 (-)
G170004 NA non-coding upstream 530118 24883026 ~ 24883288 (-)
G169567 NA other downstream 1412218 22894768 ~ 22895432 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other downstream 1831378 22338439 ~ 22476272 (-)
G169286 NA other downstream 2484612 21822713 ~ 21823038 (-)
cryl1 cryl1,LOC107712274,LOC107668879 other downstream 2641527 21648617 ~ 21666123 (-)
G169171 mphosph8 other downstream 2734240 21565128 ~ 21573410 (-)
LOC111194864 NA other upstream 1149032 25501940 ~ 25509416 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 1445602 25798510 ~ 25905616 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other upstream 1873549 26226457 ~ 26252266 (-)
LOC111194963 NA other upstream 3547283 27900191 ~ 27902899 (-)
G170854 NA other upstream 4333142 28686050 ~ 28687679 (-)

Expression


Co-expression Network