LOC103035604


Basic Information

Item Value
gene id LOC103035604
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 25731814 ~ 25754591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022680479.1
aacacagaGCTTAGCTGGTGAAGAACGGTGAAGAAGCAGGAGCAGGAGAAAGATGTCGGACTCGGCGGTGACCTGTAATAACTGCGGCTTGCCGTACACTTTACCTGAAGATGATGAAGTGGTGGGAAATGTCCCCCATGTGCTGCTGTGTGGTCACATTTTCTGCACAGTGTGCCTGCTGGAATCTCCACGTGGGTTCATCACCTGCCACGAGTGCAAGATGGTTACAAATGTTGGTGAGGAAGGAGTGGATGGGCTGCAGGTGGACAGCAGGATTATTGGACTTATCTACACTGCAAGGATGAACACCAAGAAAAGACAAGGAGACAAGCTGAGAGCTCGTAAATTTAGGAGTCCATCTGCATCGCCACCTGCCCGAACTGAGCATCCGAACACTGAAGTGggtcCAGACATGTTGAAGGTTCTAGATGAAGCTCTTTGTAAAGCAACAGAAAACCTTAATACCCTGGACAACCTGCACCAGACTCTCACTTCAGGTATTCATGCTCAGCTAAAGAAGGAGAGATCTCGTATCACAAAGGAGATTGAAGACTGCACAGAAAAGGCTATTGGCATGCTGCACAAAAGGCGCAGTGTATTGATGTCTGAACTGAGTTCTTTGGAGCAGCTGTTTTCAGATGGTCGGGaagagtgtcagaaactggaggaGAGGCGGAAGGAGATGCGCATGGCCATCCAGAAAGCGAAACATGTTCGCCAAGTCCCTTCACTTGGGACTTACTGCCATCTAGACAAGGTTCTGGAGACTCTGGAGACTCCAGTGGATGTGGGATCATATGATATGTCCAGCCTGACTTTATGTTCCAAACTCAGatgtgttCTTCATGTGGACATTCTGACTGAAAGTTTGAGCAAATTTCTGTATCTCATGGATGGTGATGTTAAGCTGGTGTCGTCAGTTCCTGCACCAGAAGAGCGGGCAGGTACACCAGCAGTGAAAAGTAGATGGGAGAAATCAGGGGAGCGGAGAGGAGGCCGGTCACGGGGGAGAGCCCGGGACAGCATGCTGAGCCTGCCCGCCCCAGCCTCAGATCAAAAACAGAACAGCCCCAATGTCATTATAGAGGAAATCATAGAGGAATCGGACAGCggaacagaaagagaaggaatgGTCTTGGACTCCAAGCGCTTACAGCGGCAGAAGGTGCCGAGAAGAAGCCGTAAGGCACAAAAGGACAGGACACCTCTTCTACAATGCAAAGCGCTACAGGAGTGGGTCGTTTTAACCCACGTGGTCAACCCAACACATTTCTACGTACGACTCGTATCGGAGCACAAAGCTGGAGTTGCGCTGACCAAAAAGGTTAACAAGTTGTGCTTTGAAGAACACAGACGTTTCATGGACAAAGATGAAATCAAAACAGGCATGCTGGTGTTTGTGAGGTGGAAAGAGGATTGGTGTAGGGCAAAGGTGTGTGAGTTGTTCCAGAAGGGCTGTCTGGAGTGTGTGACTCAGTGCTGTGCAGCTGAGATTGCTCGACTCCAAGTGTTCTTCCAGGACCATGGTTTCACGAAGGGTCTCACCTTCTCAGAtgaagGAGGTCTGAGAGGGCTAAACGAGTGTTTGCGGAAAGTTGACAGTGATGCCCAATTTGAGCTGCATCACTGGGCTCCTCAGGCCATTAGGTGTTCCCTCAGAGACATCATCCCCTCAGACCTGGTGAAAGGCTGGAGTGCTGAGGCACGTGACGAGATGAGGCGTGTGATTGGCTCTGGTGCTGTTGAGATGCAGGTGTTCAGTGAGGATAGAGACACCCTGCTGGTGGATCTGAAGAAGGCGTCTGTGGACGACATTCTGCTTTCTCTGAGAGAACATCTTGTGTTCATGGAGCTGGCCAGGTTTTATTCCCCTCAGGTGGCCCCCAGTGGCAGTAAACCACTACAGTTTTATCCACCTGTGCACCCCAAACTAAACCTAGAGCTGCATGCTGTGGTTTCCTATGTGAACACGCCATCAGACTTCTATGTACAGCTGGTGGACAGTATGGAGTTCTTGCTGCTGAATTCTAAACTGCAGGACTGTTATGGGCCTCCAGGGAGCGCGACTGAGTTGCAGATTTATTGCCCTTGTTTGGGTCAGGCCTGCGTTGCCCTCTGCGAAAAAAACAAGGACTGGTGCAGGGCTGAAGTTACAGGTTTTCCTGGTGGACGGATGGTGGAGGTCCAGTACGTCGATTTTGGCAACAAAAAAACTGTGTCTATTAATGACCTTCGACAGATAAAGGATGAGTTCTTTGCATTACCTGCCATGgCATTGTGGTGTTCTCTGGTAGATGTCACGAGTGTGGGAGACTCTTGGAGTGAAGAAAGCATTGAAGTGTTCCGAAAAATGACGGAACAGAATTTGGTCACTCTAGTGGTATCAAAGCTTGTGCCCCATTCCAAAGTGTTGCCTGTTCGTCTTTATGAGGTCAGCAAGTGTTTCACTGAGCCTGCAGTCAGCATTGGAGAAATACTGGTTAAAAGAGGACTTGCATCTTTGGTCACCAAACAAGTCCAGCTGAAGGAAACTCCCCTCCCGGATACTGCTGTGTGGGATCCCCCACTCAGTGAGGAGCATAAATCTCCAGATGAGCCGCTGCCGCCACCTCCACCTCCTACTGTTGAGCCTCCAGAGCTGCAAGTAACCTTGAATCTGCCAGCCTGCCTTAAGGACCTGAGAGTGAGAGTCACCCACGTGACCTCACCTGGACACATCTGTGTGCAGCTATTGCAATTTGATAACCAACTGAAGAGGGTTCATGACCTAATGAACAGAGGATATTTAAAGTCGGATCAGCAGGAAGTGGACTGGAAGGTGGAGATGTCCTgtgctgctaatgttaatggAGTGTGGGAGAGGGGAAAGGTGTGCAGTGTGTCCACCAGCAACATTTCAGAGGTGCTGCGCTGTGACTTTGGTAACACGGTTAAGCTCCACATCAGTAACCTGAGACCTTTGCTGCCTGAGCTGGTCGGCTCCTTACTGCTGGAGTGTTGCCTCAGTGATATAAGGCCAGCTGGTGGTCGCTCCACGTGGACAGCTACAGCTTGTGATTTCATCTCCTACTACCTTACTGGAGCCACAGCTGTAATGACCATTAAGGACGCCTCAGCTCGGCCAGCACCAGTGTCTCTGTTCTGCTCCAACCGATCAGGCCAAGATGTCAGCATTGCAGACTTTCTCATCAGTGAAGGACtcgctctgagagagagaactgtCAAAGTTCCTCCCAAACCACCCTCTGCTGTGTGTGAGGAACAAGGTGCGGTGTCAGGGGAATCTGTGTTGTGGCAGGATGAGTGTGTACCAGGTCTGGAGGAGGCTGTGTGTGAGAAGAGCAGTGTAAAGAATGAAACACCCTTATGCTCCTATTCACCTAGACCTGCCCCCCTCACCACCCCTTCCCCAGAGAAGGTGAAAACCCAGGCCTACCTGCCTCCCGAGTTTCCACCCTGCGGCCACACACGCATGAGCATCTCTGCTGTTTCTGATGATGGAGTTATCTACGCCATGACCCCACAGGCCGAGTGTGAGTTTGAACGCTTGAAGGATTGTCTACAGCAGCACATTAAGACGCTCCCCCGACAGAGGCATTACAACTGGAAGAGTGTGCTTGGCTGTGCCGTCATGGGCTCGGACATGCTCTGGTACAGAGGgcaggtccaggaggtcattggAGGCCATGTGAAAGTGCAATATGtggatcaggggattgtggaaaATATCCCAGTATGCCATGTATATCCGGTGGTGCTGTGTGAGAACATTCCTCAGCTCTCTGTGCCTTGTCAGTTAAATGGTGTCATTCCGGTTGGAGGTTCGTGGCAGTGGGACGCAGTGGCACTCATGAAAGAACTTCTGCTTGGTCGCTCAGTCAGCGTTCAGATCATGGAGCTGCCAGAGAATCTGCATGGTTTGGTTACTGTAGAGATAATACTGGATGGGATGGCACTGAGCAGAATCATGGTGAACCACCAGCATGCCTCCTTCGACCCATCCATTAGCGTCCCTGAGGATTATGTGGTGAAACCTCCAGTGCCTGACTTGGATGACTGGGATTTAAACACAAAGGGCTTGGAGGAGCTTCAGCCTGTTTTAGGCGTGTTCACCAACCCCACCCTTCCGGATAAAGGGAAACAGTTTAGAGTCAAGGTCAAGCATCTCCGTACCCCTAACGAGGTGTTTCTAAGTTTGGTGGATATGCCGATGTGTGATCAGAAACAGGAGACTCTGCAGGAAGCCTTAGAACAAGTCAACAAGGACATTGACTCTCTTCCACAGCTGACCGACTTCCCCATGGAGGGTCCGTGTCTGGCTGAATATAGTGATGGTTTGTATTACCGTGCAAAGCTGCTTGGTTTTACAGAACTTAACCCCAGCATTAAAATTCTTGTGAGGCATGTGGACTACGGCTCAGACGACATCCTGCCACCATGCAAATTGCGCTGTCTGCCCCCCTCGCTTCTACAGTTCCCCTGTGAGGCAGTGTGTGTTCGGTTGGCGGGTTTCAAGCCCccgcatgtgtgtgtggaggtggagCGCATTTCCTACCGGCCTGAGTGGAGCATGAAGTCCATGTTGGAGATGATTGACCTGTTGCATGGCAACCTCAGCGCTGTGGTTACAGGTGTAGAGCCACAGCTGACAGTGGTCCTGTACAGAGCTGATAAAACGCTGGTGCATGTTCCTCTTGTGGAGAAAGGCCTCGCCGACTACGAGTAATAAGTTTGTTTTCAAGTACCAGAAGACAGCAGTTTTTATGTTTGTGCTATTAGAACAATAACATTATGTTGATGTTGGAAGATTTACTTAAACaagttattttttctgttttaaatccTGAAaagcagttgtttttttttgtcactgcTGTACCTGTGTTCATGTTAACGTTCATCCGGCTTGATTGTGTGATTTGAATGAGTAAATCTGTGCTCTTAAAACTCT

Function

GO: NA

KEGG:

id description
K18405 TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022680479.1 True 4951 mRNA 0.50 37 25731814 25754591

Neighbor

gene id symbol gene type direction distance location
LOC103035913 LOC108430488,LOC108266232 coding downstream 11040 25685067 ~ 25720774 (-)
LOC111194961 NA coding downstream 236075 25491361 ~ 25495739 (-)
LOC111188175 NA coding downstream 242157 25476927 ~ 25489657 (-)
arhgap15 arhgap15 coding downstream 1532857 24110733 ~ 24198957 (-)
LOC103024627 ttn,LOC108435065,LOC107657509,LOC107714399 coding downstream 2266298 23313716 ~ 23465516 (-)
LOC111194933 NA coding upstream 19735 25774326 ~ 25781001 (-)
LOC103035301 NA coding upstream 274887 26029478 ~ 26031385 (-)
LOC103038930 NA coding upstream 882985 26637576 ~ 26647990 (-)
LOC103038625 LOC103038625,LOC108430498 coding upstream 898583 26653174 ~ 26663616 (-)
LOC103038316 NA coding upstream 909436 26664027 ~ 26670958 (-)
G170067 NA non-coding downstream 216383 25514996 ~ 25515431 (-)
G170045 NA non-coding downstream 305619 25425786 ~ 25426195 (-)
G170042 NA non-coding downstream 343348 25388090 ~ 25388466 (-)
G170038 NA non-coding downstream 345099 25386403 ~ 25386715 (-)
G170025 NA non-coding downstream 444202 25214731 ~ 25287612 (-)
G170146 NA non-coding upstream 42109 25796700 ~ 25811803 (-)
G170170 NA non-coding upstream 111526 25866117 ~ 25869101 (-)
G170198 NA non-coding upstream 318130 26072721 ~ 26073175 (-)
G170209 NA non-coding upstream 382184 26136775 ~ 26137154 (-)
G170210 NA non-coding upstream 383226 26137817 ~ 26138240 (-)
LOC111194864 NA other downstream 222398 25501940 ~ 25509416 (-)
G169980 arglu1a,arglu1,LOC107555859,LOC108438027,LOC107673121,LOC107675355 other downstream 1378906 24307650 ~ 24352908 (-)
G169567 NA other downstream 2836382 22894768 ~ 22895432 (-)
man1a2 man1a2,LOC107668846,LOC107658234,LOC107724469 other downstream 3255542 22338439 ~ 22476272 (-)
G169286 NA other downstream 3908776 21822713 ~ 21823038 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other upstream 43919 25798510 ~ 25905616 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other upstream 471866 26226457 ~ 26252266 (-)
LOC111194963 NA other upstream 2145600 27900191 ~ 27902899 (-)
G170854 NA other upstream 2931459 28686050 ~ 28687679 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 6141241 31895832 ~ 31904168 (-)

Expression


Co-expression Network