gabpa (gabpa,LOC107695462,LOC107756759,LOC107595806)


Basic Information

Item Value
gene id gabpa
gene name gabpa,LOC107695462,LOC107756759,LOC107595806
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31895832 ~ 31904168 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU231746
CCTCCACATCCCCGCCCCCAATGCAATGCTGACCGAAAACTAGCATGAACATTTAGCTGGAGAAGTTAGCGCACACTAAGCTAGCTGGCTACAGCCCCACTCTTCTCAAACTAACTACAGCCTACAGCACTTACTTAGCGATCCGAAAAAGAGgttagAAATTTTCTTTCAAGATGTCAAAAAGTGAGACTGAGGAGATGATTGAGATCGAAATTGATGGACATGAGAAACAAGAATGCTTAGAAGAAGGGATAGAGGAGCACATCATTACATCAGCTGAACTAATCACACAGGACATTGATATAAATGAGCCTGTGGGCAACTTAAAGAAGTTATTGGAACCCCGTATACAAATTCCGCTGGATGGATATGATATTTGTCTGCAAGATATTCAGTTGCACCCTGACCACAGCCTTTTTGACCAAGGTGTGAAGACAGATGGTACAGTTCAGCTGAGTGTGCAGATTGTCACCAGACCAGGCA
>XM_022680561.1
GGTTTCACAGGCTTAACTAAATAATAGGTCATCACAGACATATATTGTTTGGCTACAAAAGTAGTAGTTAGGATGAGTAAAGGCAAGACATTTAACCTTAAGGACACTGTacctgttaagcatggtggtggtagcaggATCATGCCgtaatattgtatgcataaCTTTGATCCTGTACTTATGTCAGAAAACCCACCTAAAAGTTAAAACTGACAAACCATTGTTATGAGTGTACATGAACCtcaagtatataatataatcacaCGTTGTTTGTTGATCTATTAGTCTTTGCAGTCTGTTAAATACCTAGCTAACGTCACATTTGCACGGACTGATGTTTATTTACAACGacagattaaataaaacattagctaataacaacaacaacaacaacaacaacaactttcACATGTTTAACTAAATAACTACCCTAGCTAAGTCAACTTACAAGCTAACGCGGTTGGGAACGAGACAGATAAACTCTGTGTTTTGGCTTTAGTaccctagctaactagctatcttCTTAAATGTGAGCCAAGTTAAAAAGTTCCCTAgccaaagctaagctaagcaacCAAACTGTACACAACTAAGCAAGCAGTGTTTTGCTGGACGCTGGCAGACAGAGACCAGCGAGGCCTCCTCCACATCCCCGCCCCCAATGCAATGCTGACCGAAAACTAGCATGAACATTTAGCTGGAGAAGTTAGCGCACACTAAGCTAGCTGGCTACAGCCCCACTCTTCTCAAACTAACTACAGCCTACAGCACTTACTTAGCGATCCGAAAAAGAGgttagAAATTTTCTTTCAAGATGTCAAAAAGTGAGACTGAGGAGATGATTGAGATCGAAATTGATGGACATGAGAAACAAGAATGCTTAGAAGAAGGGATAGAGGAGCACATCATTACATCAGCTGAACTAATCACACAGGACATTGATATAAATGAGCCTGTGGGCAACTTAAAGAAGTTATTGGAACCCCGTATACAAATTCCGCTGGATGGATATGATATTTGTCTGCAAGATATTCAGTTGCACCCTGACCACAGCCTTTTTGACCAAGGTGTGAAGACAGATGGTACAGTTCAGCTGAGTGTGCAGATTGTCACCAGACCAGgtGAAGAAAAATTGAATATCCTGGAAATAGTGAAGCCAGTAGAGACAGTCGAGGTGGTGATTGACCCGGATGCAGCTGCAGGAGAGGAAGCACACCTGGTGGAGGATGGGCAGGTGATAGCAGTAGAACGTGCAACAATTGCAGATGAAACCTCAGAACAGGTGACTCGATGGGCAGCTGCACTAGAGGGATACCGGAAGGAGCAGGTCCGATTGAGCATCCCTTATGACCCGGTGCAGTGGACGGCTGATCAGGTGATCCACTGGGCAGTATGGGTGATGAAGGAGTTCAACATTGAGGAGATGGAGGTAGGCGGCATCCACATTCCAGGTCGCCAGCTGTGTGCCTTCAGCCAGGAGGAATTCCTCCAGAGAGTGCCCAATGGAGAGATCCTGTGGAGCCATCTGGAGCTGTTGCGCAAGTATGTTCTGGCGAGTCAGGAACAGGGACAGGAAGCCACAGTCACAATTGACCAAACTGTGCAGATTATCCCTGCCCCTGTGCAGCAGGCCACAACCACAGCCATAAAGGTGCAGAAGCATAACAAAATGCCCAGAGCTCCTCGTATCTCAGGAGAAGAGCGCAGTTCCCCGGGCAACCGCACAGGAAATAATGGACAAATCCAGCTGTGGCAGTtcctgctggagctgctgaCAGATAAGGATGCGAGGGAGTGCATCTCCTGGGTGGGAGAGGAAGGGGAATTCAAACTCAACCAGCCTGAGCTGGTGGCTCAGAAATGGGGGCAGCGCAAGAACAAGCCCACCATGAACTACGAGAAGCTCAGCAGAGCCCTCAGATACTACTATGATGGCGACATGATCAGCAAAGTGCAGGGCAAGCGCTTCGTCTACAAATTTGTTTGTGACCTGAGGACTCTGATCGGCTACAGCGCCGCTGAACTGAACAACCTGGTGACGGAGTGCGAGCAGAAGAAACTAGCGCGGGTTCAGCTGCATGGGATCGGCCAGTCCGTCAACACAGTCACCCTGGCGACAGCTGCCGGGCAACCAGTCACCACAGTCACCCTGGCCGCTGCGGCACTGGAGAAGGACAGCTGAGTGGGAGAGGCTGGGTAAAAAGGGGGCATACGAAAAAGGGGAGGGGCAAAGAAAGGGACTTTGGGCATGGCAAATGGGCTTatgagcaggtgtgtgtgtgtgtgtttgtttgtttgtgtgttttaagagCGTGTGACtgtaagtatgtatgtatgtttgcgtgtgtgtgtatatacatgaATGAGTGAATGTTGAGGGACAGTATAGCAGGTCCTGTGAGAGGGAGATGAATGAAACTATCAATGGCCGTGTATGGGCTTTGAGTTTTTGTACGCTTCTTCTCTGACTGCAGGGTAGCTTTGGCTGCATttccattgtatatatattctatgtttTTGATAGCCATGAGGGCAGTGTATTTTGATATTTTCCATTTGTAAAGGATCcgtactttctttcttttttattttgaggtTCCAATTTCCCTCAAGGTGAGGTACTTTTAACTGTCCACCAGGGGGCAATAAAGAGAAAAGTTGATTTTTTGAAA
>XM_022680562.1
CCCATAGCTAATAGCTGGCTAGCTCACTAATATTTAAGCTACATTTTACAAGAGTTTTCTTAATAGCTACTTCAGAACCATAATGTGGTTATTTTAGGCTGTTAGAATAGACTTAACTAGTTATTTAGGTAAAGTAGAAATAAGTAACTTAGCTAGTTTGCATAACCTAGGCTAGCTTAGCGTAGCTAGCGTCACATACAGTTACACACAGACACTTTATACAGTACAGAGTTTTCCTAGCAGGCAAACTCTGCTTTTATCAAATTATCAGGCCAGGTTTAGTTAGAACTGTTAACTCCACTCTATTCATTTTAGATTGTGTTAGAACAGGTTAATTTAGATAAAAATAACCTGTAGTtaatataactaaataaatcGCAGTGAAGTGTAACGTTAACGTACCTAGCGCCACACAGTTACATGAGTTTTACTAGCAGGCAAACTCTGCCTTTATCAGGTttattagctaatgttatcaaGTCAGGTTTAGTACTTTAAACTCTAACGTTACTCTAATAATCTAAGACTAAGCTAAATTAAGCTAGTTAGTTATCTAACCTGTATTTTATATGAATAAATCGCAGTGAAGAAGTAAGTCTGTCTGTTTTTGGCTGGGCGAGCTCACAGCCAGCCCACTCACTACTCTAGgtaagctaaagctagctatCCAGGCGTGTCTCCCTGTCTCCCCATGAGCTAACCAAGATAGCTAACAAAGGCCAAGCGCTCAAATAAGCAGTAGTTTTTAGACGACTTAAGCTAAAATATCACTACCTGACACCCCAAAATCAACTCCTAGCCTCACAATCGAGAGATTTCCCCGCCGTCGTCCCGTCCGTTTCTCCAGCCCGTTTTCGGAAGTCTGACAGCGCCGTGACTTTCGCCAGGATTTCCGGCTGCTTTTACATTGCccttctgttgttttgtttccGTTTCTTCCATTTCCGTTTTAAGTTTCCACAATCTAAAGTGTGATGTGTGGCGATCTATTAAAAGTcgtaaaagttttaaaaagtcgCTTCTCGCACCGTTTTTTCCAATCATACCCCGAAACCCTAAACGACTCCCAATATGGCAACTGCGTTTGCTTCTATTCGCGCGTCCTCTtcctagctaacctaactaacgcAGCGACTGTCACCAAAGACTGACAGTAACCGCCGTTTTTTCCAGCTTTCCGACAAAGCAACGTCCAGTTCTGATTAACAAAACCAGCCGTTTTTAGTTCACCCTTTAAAATGTCATGTTTATTTCACACACATGGCAGAGAATCGCAGTGGGCCTACACTCTGCACAAGCCTCGGTGTTGCGTAAGAGTTGCCCGCTTTCGAAGAGCTCTTTTAGCGCCTCGCACTCTCCCCCTCTACCGCCATGTAACTACCGCCACCGACCACAGgttagAAATTTTCTTTCAAGATGTCAAAAAGTGAGACTGAGGAGATGATTGAGATCGAAATTGATGGACATGAGAAACAAGAATGCTTAGAAGAAGGGATAGAGGAGCACATCATTACATCAGCTGAACTAATCACACAGGACATTGATATAAATGAGCCTGTGGGCAACTTAAAGAAGTTATTGGAACCCCGTATACAAATTCCGCTGGATGGATATGATATTTGTCTGCAAGATATTCAGTTGCACCCTGACCACAGCCTTTTTGACCAAGGTGTGAAGACAGATGGTACAGTTCAGCTGAGTGTGCAGATTGTCACCAGACCAGgtGAAGAAAAATTGAATATCCTGGAAATAGTGAAGCCAGTAGAGACAGTCGAGGTGGTGATTGACCCGGATGCAGCTGCAGGAGAGGAAGCACACCTGGTGGAGGATGGGCAGGTGATAGCAGTAGAACGTGCAACAATTGCAGATGAAACCTCAGAACAGGTGACTCGATGGGCAGCTGCACTAGAGGGATACCGGAAGGAGCAGGTCCGATTGAGCATCCCTTATGACCCGGTGCAGTGGACGGCTGATCAGGTGATCCACTGGGCAGTATGGGTGATGAAGGAGTTCAACATTGAGGAGATGGAGGTAGGCGGCATCCACATTCCAGGTCGCCAGCTGTGTGCCTTCAGCCAGGAGGAATTCCTCCAGAGAGTGCCCAATGGAGAGATCCTGTGGAGCCATCTGGAGCTGTTGCGCAAGTATGTTCTGGCGAGTCAGGAACAGGGACAGGAAGCCACAGTCACAATTGACCAAACTGTGCAGATTATCCCTGCCCCTGTGCAGCAGGCCACAACCACAGCCATAAAGGTGCAGAAGCATAACAAAATGCCCAGAGCTCCTCGTATCTCAGGAGAAGAGCGCAGTTCCCCGGGCAACCGCACAGGAAATAATGGACAAATCCAGCTGTGGCAGTtcctgctggagctgctgaCAGATAAGGATGCGAGGGAGTGCATCTCCTGGGTGGGAGAGGAAGGGGAATTCAAACTCAACCAGCCTGAGCTGGTGGCTCAGAAATGGGGGCAGCGCAAGAACAAGCCCACCATGAACTACGAGAAGCTCAGCAGAGCCCTCAGATACTACTATGATGGCGACATGATCAGCAAAGTGCAGGGCAAGCGCTTCGTCTACAAATTTGTTTGTGACCTGAGGACTCTGATCGGCTACAGCGCCGCTGAACTGAACAACCTGGTGACGGAGTGCGAGCAGAAGAAACTAGCGCGGGTTCAGCTGCATGGGATCGGCCAGTCCGTCAACACAGTCACCCTGGCGACAGCTGCCGGGCAACCAGTCACCACAGTCACCCTGGCCGCTGCGGCACTGGAGAAGGACAGCTGAGTGGGAGAGGCTGGGTAAAAAGGGGGCATACGAAAAAGGGGAGGGGCAAAGAAAGGGACTTTGGGCATGGCAAATGGGCTTatgagcaggtgtgtgtgtgtgtgtttgtttgtttgtgtgttttaagagCGTGTGACtgtaagtatgtatgtatgtttgcgtgtgtgtgtatatacatgaATGAGTGAATGTTGAGGGACAGTATAGCAGGTCCTGTGAGAGGGAGATGAATGAAACTATCAATGGCCGTGTATGGGCTTTGAGTTTTTGTACGCTTCTTCTCTGACTGCAGGGTAGCTTTGGCTGCATttccattgtatatatattctatgtttTTGATAGCCATGAGGGCAGTGTATTTTGATATTTTCCATTTGTAAAGGATCcgtactttctttcttttttattttgaggtTCCAATTTCCCTCAAGGTGAGGTACTTTTAACTGTCCACCAGGGGGCAATAAAGAGAAAAGTTGATTTTTTGAAA
>XM_022680563.1
GGTTTCACAGGCTTAACTAAATAATAGGTCATCACAGACATATATTGTTTGGCTACAAAAGTAGTAGTTAGGATGAGTAAAGGCAAGACATTTAACCTTAAGGACACTGTacctgttaagcatggtggtggtagcaggATCATGCCgtaatattgtatgcataaCTTTGATCCTGTACTTATGTCAGAAAACCCACCTAAAAGTTAAAACTGACAAACCATTGTTATGAGTGTACATGAACCtcaagtatataatataatcacaCGTTGTTTGTTGATCTATTAGTCTTTGCAGTCTGTTAAATACCTAGCTAACGTCACATTTGCACGGACTGATGTTTATTTACAACGacagattaaataaaacattagctaataacaacaacaacaacaacaacaacaactttcACATGTTTAACTAAATAACTACCCTAGCTAAGTCAACTTACAAGCTAACGCGGTTGGGAACGAGACAGATAAACTCTGTGTTTTGGCTTTAGTaccctagctaactagctatcttCTTAAATGTGAGCCAAGTTAAAAAGTTCCCTAgccaaagctaagctaagcaacCAAACTGTACACAACTAAGCAAGCAGTGTTTTGCTGGACGCTGGCAGACAGAGACCAGCGAGGCCTCCTCCACATCCCCGCCCCCAATGCAATGCTGACCGAAAACTAGCATGAACATTTAGCTGGAGAAGTTAGCGCACACTAAGCTAGCTGGCTACAGCCCCACTCTTCTCAAACTAACTACAGCCTACAGCACTTACTTAGCGATCCGAAAAAGAGAAATTTTCTTTCAAGATGTCAAAAAGTGAGACTGAGGAGATGATTGAGATCGAAATTGATGGACATGAGAAACAAGAATGCTTAGAAGAAGGGATAGAGGAGCACATCATTACATCAGCTGAACTAATCACACAGGACATTGATATAAATGAGCCTGTGGGCAACTTAAAGAAGTTATTGGAACCCCGTATACAAATTCCGCTGGATGGATATGATATTTGTCTGCAAGATATTCAGTTGCACCCTGACCACAGCCTTTTTGACCAAGGTGTGAAGACAGATGGTACAGTTCAGCTGAGTGTGCAGATTGTCACCAGACCAGgtGAAGAAAAATTGAATATCCTGGAAATAGTGAAGCCAGTAGAGACAGTCGAGGTGGTGATTGACCCGGATGCAGCTGCAGGAGAGGAAGCACACCTGGTGGAGGATGGGCAGGTGATAGCAGTAGAACGTGCAACAATTGCAGATGAAACCTCAGAACAGGTGACTCGATGGGCAGCTGCACTAGAGGGATACCGGAAGGAGCAGGTCCGATTGAGCATCCCTTATGACCCGGTGCAGTGGACGGCTGATCAGGTGATCCACTGGGCAGTATGGGTGATGAAGGAGTTCAACATTGAGGAGATGGAGGTAGGCGGCATCCACATTCCAGGTCGCCAGCTGTGTGCCTTCAGCCAGGAGGAATTCCTCCAGAGAGTGCCCAATGGAGAGATCCTGTGGAGCCATCTGGAGCTGTTGCGCAAGTATGTTCTGGCGAGTCAGGAACAGGGACAGGAAGCCACAGTCACAATTGACCAAACTGTGCAGATTATCCCTGCCCCTGTGCAGCAGGCCACAACCACAGCCATAAAGGTGCAGAAGCATAACAAAATGCCCAGAGCTCCTCGTATCTCAGGAGAAGAGCGCAGTTCCCCGGGCAACCGCACAGGAAATAATGGACAAATCCAGCTGTGGCAGTtcctgctggagctgctgaCAGATAAGGATGCGAGGGAGTGCATCTCCTGGGTGGGAGAGGAAGGGGAATTCAAACTCAACCAGCCTGAGCTGGTGGCTCAGAAATGGGGGCAGCGCAAGAACAAGCCCACCATGAACTACGAGAAGCTCAGCAGAGCCCTCAGATACTACTATGATGGCGACATGATCAGCAAAGTGCAGGGCAAGCGCTTCGTCTACAAATTTGTTTGTGACCTGAGGACTCTGATCGGCTACAGCGCCGCTGAACTGAACAACCTGGTGACGGAGTGCGAGCAGAAGAAACTAGCGCGGGTTCAGCTGCATGGGATCGGCCAGTCCGTCAACACAGTCACCCTGGCGACAGCTGCCGGGCAACCAGTCACCACAGTCACCCTGGCCGCTGCGGCACTGGAGAAGGACAGCTGAGTGGGAGAGGCTGGGTAAAAAGGGGGCATACGAAAAAGGGGAGGGGCAAAGAAAGGGACTTTGGGCATGGCAAATGGGCTTatgagcaggtgtgtgtgtgtgtgtttgtttgtttgtgtgttttaagagCGTGTGACtgtaagtatgtatgtatgtttgcgtgtgtgtgtatatacatgaATGAGTGAATGTTGAGGGACAGTATAGCAGGTCCTGTGAGAGGGAGATGAATGAAACTATCAATGGCCGTGTATGGGCTTTGAGTTTTTGTACGCTTCTTCTCTGACTGCAGGGTAGCTTTGGCTGCATttccattgtatatatattctatgtttTTGATAGCCATGAGGGCAGTGTATTTTGATATTTTCCATTTGTAAAGGATCcgtactttctttcttttttattttgaggtTCCAATTTCCCTCAAGGTGAGGTACTTTTAACTGTCCACCAGGGGGCAATAAAGAGAAAAGTTGATTTTTTGAAA

Function

symbol description
gabpa Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in endothelial cell. Orthologous to human GABPA (GA binding protein transcription factor subunit alpha).

NR:

description
PREDICTED: GA-binding protein alpha chain

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09441 GABPA; GA-binding protein transcription factor, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
TU231746 False 483 TUCP 0.44 4 31900348 31903527
XM_022680561.1 False 2672 mRNA 0.46 10 31895832 31904168
XM_022680562.1 True 3274 mRNA 0.46 10 31895832 31903157
XM_022680563.1 False 2667 mRNA 0.46 10 31895832 31904168

Neighbor

gene id symbol gene type direction distance location
LOC103022864 si:dkey-67c22.2,LOC107569142,LOC107748125,LOC107673696,LOC107656780,LOC108426078,LOC107756753 coding downstream 641425 31244773 ~ 31254407 (-)
rcan1 rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752 coding downstream 652316 31232151 ~ 31243516 (-)
LOC107197676 LOC108426021 coding downstream 665776 31228210 ~ 31230056 (-)
mab21l3 mab21l3,LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107748187 coding downstream 673327 31214220 ~ 31222505 (-)
LOC103024756 atp1a1,atp1a1b,LOC107656784,LOC107756749,LOC107569141 coding downstream 697871 31179433 ~ 31197961 (-)
LOC103043487 jam2b,LOC108426074,LOC107577316 coding upstream 101 31904269 ~ 31912403 (-)
LOC103045951 tfdp1,tfdp1a,LOC108426071,LOC108266453,LOC107595816,LOC107748134,LOC107597491,LOC107756763,LOC107673714 coding upstream 28223 31932391 ~ 31942213 (-)
LOC103042484 shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding upstream 235405 32139573 ~ 32151799 (-)
LOC103041458 LOC108426064,LOC108266307 coding upstream 365371 32269539 ~ 32297518 (-)
LOC103041148 LOC108426017 coding upstream 395199 32299367 ~ 32303297 (-)
G171209 NA non-coding downstream 314 31836759 ~ 31895518 (-)
LOC111194941 NA non-coding downstream 26360 31868559 ~ 31869472 (-)
G171195 NA non-coding downstream 179542 31715983 ~ 31716290 (-)
G171194 NA non-coding downstream 184351 31711109 ~ 31711481 (-)
G171193 NA non-coding downstream 225066 31670557 ~ 31670766 (-)
G171230 cdc16,LOC107673708,LOC107597489,LOC107748135,LOC107595809,LOC107695467 non-coding upstream 51650 31955818 ~ 31956701 (-)
G171231 cdc16,LOC107595809,LOC107756764,LOC107695467,LOC107748135,LOC107597489 non-coding upstream 52999 31957167 ~ 31960193 (-)
G171232 NA non-coding upstream 57113 31961281 ~ 31961574 (-)
G171236 upf3a,LOC107673688,LOC107748176 non-coding upstream 62038 31966206 ~ 31967722 (-)
G171237 NA non-coding upstream 74923 31979091 ~ 31979292 (-)
G170854 NA other downstream 3208153 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 3992933 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 5643566 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 5990216 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 6386416 25501940 ~ 25509416 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 854339 32758507 ~ 32776018 (-)
G171553 NA other upstream 1269885 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 1310154 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 1403825 33307993 ~ 33318351 (-)
tmtc4 tmtc4,LOC107600375,LOC107748611,LOC107681320,LOC107569561 other upstream 2351209 34255377 ~ 34273789 (-)

Expression


Co-expression Network