rcan1 (rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752)


Basic Information

Item Value
gene id rcan1
gene name rcan1,rcan1a,LOC108266951,LOC107748124,LOC107656781,LOC107597484,LOC107673717,LOC107756752
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31232151 ~ 31243516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007227887.3
AGCTATtacatatgatttttttaaaatggtaGTTCTTTATTGATTTATATGCGCTTTTACCGCTTTTGGGTTATCCGGAGACCAGTTTTACATTAATGACTGATCAGGGGGTGATTATGAGGGGCGGTGCGGTTTTAACTGGATGGTTTTCAGAGTTTCCACAAGTGTGCGGTGAAACTTAGCGTTACCCGCtgactgagctgagctgagcaggGCTGGGTTCAGCTGGGGTTCTGTGTACACATAACTGGTATATAAAACTTCTCCAAGACAACGTGGTGCTCATTATTATCCCAGTATTATGTCCGGCATGCAGCGAGTAGAGGCTGTAGAAGAGGAGGACACTGTGGAGGTTCAGTTCACAGACCGGCCTGACTCTCTGGTGGTGTGTAAAGTAGCTGAAGACCTGTTCAGAGACCAGCTACTGAGTGCTCGGTTTGAGGAGCTGTTCCGTGCCTTTGACAGTGAGGTTACCTTCCAGTTCTTCAAGAGCTTCAGGCGGGTCCGAATTAACTTCAGCAATGCCCTCGCTGCAGCAGAGGCCAGAGCAAAACTTCACAAGAGTGACTTCAACGGCAGAGAAGTGCGACTTTACTTTGCCCAGTCTGTACATATAGGAAGTCCACGTCTGGAGCCTCCCAAACCGGATAAGCAGTTCCTTCTCTCTCCACCTCCTTCCCCTCCTGTTGGCTGGGAACAGGCTCAAGATGCCACACCAGTCATCAACTATGATCTCCTGTGTGCCATCGCAAGACTTGGTCCAGGTGAGAAATACGAGCTCCACTCTGGAACTCCCACTACCCCCAGTGTGGTGGTGCACGTGTGTGAAAGCGACCAGGACAGCTCTGGTGGCGAGGACGACGTGGACGGATTTAGACGCCCTCGCCCCAAAATTATCCAGACCCGGCGCCCCGACTACATCCCTGCCATCACACAGTGAGCCCGAGGAGCGTCTTCCTTGTGCTGTTGTCTTCGCTTTACCATCTCAGGGGCTGATGGGCGGCCAGCTGTGGCATGCGGTCAGTCTTCCCCTTTAGAGGAGGCCTTGAATCCGAGCCGAGTCCTGTGGAGAAAGAAATAATGTACATGTCCACTATCTTGCAGGGGAAGGGGGGTTCATTGCATGCATTTGTTTTCTCCACAATTAAAATTCAAGGGATTTTCAGGATTGTAAATTCCATTGGTGTCTATGGCTACAGAGTACAAAAGTCTCCAGTtgtgagtttatttatttcctttatctCGAGAAGCATGCTTTGTCCCTTTGAGAAGGTGTGACGTATTTGTATAATGAAATCTGTaatggagtgtgtgttttttttttttttttcctctctatcTCCTCCCTGTCAGCAGTCtcagttttacatgtttttattttattttatttttttatttatgttttcatCTTCCGATTGTAGGAGGCAATAGAATTCCTATGCCTGTGTAGGATTTGATTAATCTTAGGCTTGGAAAGTTTGCGGTTATGggcaatatatttttatgttaatttgtaaGGATTGCTTACTTTCTAAACTATTAATCTGTGTGTGACTGAGGATCTAAAGATGGAGATCCTTATTAGTAATCttacttaattaaaaacaatgcaGTTTGTTGAATAAACTGGTTTTGTTTGCCATGCCTTGTTAAATCTGGTTTACTAATGTAAGTATTTTGGTCAGCTAAAAAGAAACCCCTATTGGACATCTTGGCCCAATGTTATCCTGATTGTAATTTTGTACAGACAGTCTTTCTCATGTCTACACAAATTGTGATTTACATTTAGTTACTTCAGGACCATAACACTGTAAAAGCAATCTGCTTTGATGATGAGGGAggactgttatactgttatgcTCTTTTACCAGAATTTGCACAAGTTAAACACAATGGTAAAAATGAGCTTAACAATGTCAGTCCAATGCCTTTTTGTGTTTCTTGTTTGTCTGTATATGTACAGTTACCTCATTGTAATGTCTTAATTGTCTGATCACTCCCAACTTTGTAACAACTTCCTTGGTTTCAACAATGATGTTGACttactaatggcttggatgtatgTGTTCAAACTTGTACATGAACAGCCAcaaccaaaataataaaacaggaaCTTACACAGTT
>XM_022680559.1
GGGCGGGGAGTTGGGCTCGTATATAAAAGGCAGGAGCGAGGCGGCAGGCTAGTCTGCATTGACAGAGAGTCGAGTGCGGTTAGCTGATAGCTAAGTGTGTCGTTTACTAAGTAACTAGCTAGGAACCTTCTAGAAGGCTCTTTACCGACATTAACTGTGCTTTTAtaaatttttacttattttttattctattttcgtGCTCACACTTTTTAAGTGAGCTGTTTTAGAGGCATTTGTCGTTTTGGCTGTCACCGTTTTCCAAGTTAGCTAATCgcgctaactagcttagctaaattaACTAACAAggtagctaacctagttagcaTTACCCGGCTGCAGCGTTAACTTGGCATAACAGAGGCGGCGTTAAACAAATAAAGGAtagggaaaaaataattaaagaggaagaaggaagaaCAAATCTAACGCTATAGTAAGGCAAGTAGCCTATTTCTGACCCACATTTCATTTCTATTGCCCTCACGCTGGGGAAGGCAAAACGGACCCCTCTCCTCCGCCCCTCCTGCCCTCTTCGGTCTCTCACACCTCAGGTCCTCCGGAGGATCCAGCGAGCATCCGTCATGCATCTTAAAACCATGAAGTGCAACCGTTTTTGCCTCATCGCCTCCCTGGAAGACCAGGATATGTTCAACAGACATGAGGCCAGGGCTCGGTTTGAGGAGCTGTTCCGTGCCTTTGACAGTGAGGTTACCTTCCAGTTCTTCAAGAGCTTCAGGCGGGTCCGAATTAACTTCAGCAATGCCCTCGCTGCAGCAGAGGCCAGAGCAAAACTTCACAAGAGTGACTTCAACGGCAGAGAAGTGCGACTTTACTTTGCCCAGTCTGTACATATAGGAAGTCCACGTCTGGAGCCTCCCAAACCGGATAAGCAGTTCCTTCTCTCTCCACCTCCTTCCCCTCCTGTTGGCTGGGAACAGGCTCAAGATGCCACACCAGTCATCAACTATGATCTCCTGTGTGCCATCGCAAGACTTGGTCCAGGTGAGAAATACGAGCTCCACTCTGGAACTCCCACTACCCCCAGTGTGGTGGTGCACGTGTGTGAAAGCGACCAGGACAGCTCTGGTGGCGAGGACGACGTGGACGGATTTAGACGCCCTCGCCCCAAAATTATCCAGACCCGGCGCCCCGACTACATCCCTGCCATCACACAGTGAGCCCGAGGAGCGTCTTCCTTGTGCTGTTGTCTTCGCTTTACCATCTCAGGGGCTGATGGGCGGCCAGCTGTGGCATGCGGTCAGTCTTCCCCTTTAGAGGAGGCCTTGAATCCGAGCCGAGTCCTGTGGAGAAAGAAATAATGTACATGTCCACTATCTTGCAGGGGAAGGGGGGTTCATTGCATGCATTTGTTTTCTCCACAATTAAAATTCAAGGGATTTTCAGGATTGTAAATTCCATTGGTGTCTATGGCTACAGAGTACAAAAGTCTCCAGTtgtgagtttatttatttcctttatctCGAGAAGCATGCTTTGTCCCTTTGAGAAGGTGTGACGTATTTGTATAATGAAATCTGTaatggagtgtgtgttttttttttttttttcctctctatcTCCTCCCTGTCAGCAGTCtcagttttacatgtttttattttattttatttttttatttatgttttcatCTTCCGATTGTAGGAGGCAATAGAATTCCTATGCCTGTGTAGGATTTGATTAATCTTAGGCTTGGAAAGTTTGCGGTTATGggcaatatatttttatgttaatttgtaaGGATTGCTTACTTTCTAAACTATTAATCTGTGTGTGACTGAGGATCTAAAGATGGAGATCCTTATTAGTAATCttacttaattaaaaacaatgcaGTTTGTTGAATAAACTGGTTTTGTTTGCCATGCCTTGTTAAATCTGGTTTACTAATGTAAGTATTTTGGTCAGCTAAAAAGAAACCCCTATTGGACATCTTGGCCCAATGTTATCCTGATTGTAATTTTGTACAGACAGTCTTTCTCATGTCTACACAAATTGTGATTTACATTTAGTTACTTCAGGACCATAACACTGTAAAAGCAATCTGCTTTGATGATGAGGGAggactgttatactgttatgcTCTTTTACCAGAATTTGCACAAGTTAAACACAATGGTAAAAATGAGCTTAACAATGTCAGTCCAATGCCTTTTTGTGTTTCTTGTTTGTCTGTATATGTACAGTTACCTCATTGTAATGTCTTAATTGTCTGATCACTCCCAACTTTGTAACAACTTCCTTGGTTTCAACAATGATGTTGACttactaatggcttggatgtatgTGTTCAAACTTGTACATGAACAGCCAcaaccaaaataataaaacaggaaCTTACACAGTT

Function

symbol description
rcan1a Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Acts upstream of or within sprouting angiogenesis. Predicted to be active in cytoplasm and nucleus. Is expressed in brain; cardiac ventricle; heart; heart tube; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Alzheimer's disease. Orthologous to human RCAN1 (regulator of calcineurin 1).
rcan1 Enables identical protein binding activity. Involved in negative regulation of calcineurin-NFAT signaling cascade. Predicted to be active in cytoplasm and nucleus. Implicated in Alzheimer's disease.

NR:

description
PREDICTED: calcipressin-1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007227887.3 False 2124 mRNA 0.43 4 31232151 31243516
XM_022680559.1 True 2362 mRNA 0.43 4 31232151 31237281

Neighbor

gene id symbol gene type direction distance location
LOC107197676 LOC108426021 coding downstream 2095 31228210 ~ 31230056 (-)
mab21l3 mab21l3,LOC107597583,LOC107673652,LOC107756750,LOC107656782,LOC107748187 coding downstream 9646 31214220 ~ 31222505 (-)
LOC103024756 atp1a1,atp1a1b,LOC107656784,LOC107756749,LOC107569141 coding downstream 34190 31179433 ~ 31197961 (-)
lrp1b lrp1b,LOC107660661,LOC107661145,LOC107746259 coding downstream 173903 30550239 ~ 31058248 (-)
LOC103025591 NA coding downstream 838182 30384602 ~ 30393969 (-)
LOC103022864 si:dkey-67c22.2,LOC107569142,LOC107748125,LOC107673696,LOC107656780,LOC108426078,LOC107756753 coding upstream 1257 31244773 ~ 31254407 (-)
LOC103043487 jam2b,LOC108426074,LOC107577316 coding upstream 660753 31904269 ~ 31912403 (-)
LOC103045951 tfdp1,tfdp1a,LOC108426071,LOC108266453,LOC107595816,LOC107748134,LOC107597491,LOC107756763,LOC107673714 coding upstream 688875 31932391 ~ 31942213 (-)
LOC103042484 shox,LOC107597497,LOC107748138,LOC107673655,LOC107695485 coding upstream 896057 32139573 ~ 32151799 (-)
LOC103041458 LOC108426064,LOC108266307 coding upstream 1026023 32269539 ~ 32297518 (-)
G171082 NA non-coding downstream 606792 30613683 ~ 30625359 (-)
G171037 NA non-coding downstream 688195 30543565 ~ 30543956 (-)
G171036 NA non-coding downstream 710321 30521412 ~ 30521830 (-)
G171028 ralb,ralba,LOC105901921,LOC102232228,LOC107746258 non-coding downstream 814525 30394953 ~ 30417626 (-)
LOC111194938 NA non-coding downstream 1093753 30136857 ~ 30138398 (-)
G171187 NA non-coding upstream 225158 31468674 ~ 31468905 (-)
G171191 NA non-coding upstream 296050 31539566 ~ 31539794 (-)
G171193 NA non-coding upstream 427041 31670557 ~ 31670766 (-)
G171194 NA non-coding upstream 467593 31711109 ~ 31711481 (-)
G171195 NA non-coding upstream 472467 31715983 ~ 31716290 (-)
G170854 NA other downstream 2544472 28686050 ~ 28687679 (-)
LOC111194963 NA other downstream 3329252 27900191 ~ 27902899 (-)
LOC103029246 LOC108430494,LOC108266255,LOC107551943,LOC107663912,LOC107733654,LOC107738526 other downstream 4979885 26226457 ~ 26252266 (-)
LOC103030841 uggt2,LOC108430493,LOC108266228,LOC107600415,LOC107663813,LOC107555197 other downstream 5326535 25798510 ~ 25905616 (-)
LOC111194864 NA other downstream 5722735 25501940 ~ 25509416 (-)
gabpa gabpa,LOC107695462,LOC107756759,LOC107595806 other upstream 652316 31895832 ~ 31904168 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497 other upstream 1514991 32758507 ~ 32776018 (-)
G171553 NA other upstream 1930537 33174053 ~ 33176284 (-)
LOC103028031 LOC108426040 other upstream 1970806 33214322 ~ 33235878 (-)
LOC103024438 LOC108426008 other upstream 2064477 33307993 ~ 33318351 (-)

Expression


Co-expression Network