RNA id: XM_022680559.1


Basic Information

Item Value
RNA id XM_022680559.1
length 2362
RNA type mRNA
GC content 0.43
exon number 4
gene id rcan1
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31232151 ~ 31243516 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGCGGGGAGTTGGGCTCGTATATAAAAGGCAGGAGCGAGGCGGCAGGCTAGTCTGCATTGACAGAGAGTCGAGTGCGGTTAGCTGATAGCTAAGTGTGTCGTTTACTAAGTAACTAGCTAGGAACCTTCTAGAAGGCTCTTTACCGACATTAACTGTGCTTTTAtaaatttttacttattttttattctattttcgtGCTCACACTTTTTAAGTGAGCTGTTTTAGAGGCATTTGTCGTTTTGGCTGTCACCGTTTTCCAAGTTAGCTAATCgcgctaactagcttagctaaattaACTAACAAggtagctaacctagttagcaTTACCCGGCTGCAGCGTTAACTTGGCATAACAGAGGCGGCGTTAAACAAATAAAGGAtagggaaaaaataattaaagaggaagaaggaagaaCAAATCTAACGCTATAGTAAGGCAAGTAGCCTATTTCTGACCCACATTTCATTTCTATTGCCCTCACGCTGGGGAAGGCAAAACGGACCCCTCTCCTCCGCCCCTCCTGCCCTCTTCGGTCTCTCACACCTCAGGTCCTCCGGAGGATCCAGCGAGCATCCGTCATGCATCTTAAAACCATGAAGTGCAACCGTTTTTGCCTCATCGCCTCCCTGGAAGACCAGGATATGTTCAACAGACATGAGGCCAGGGCTCGGTTTGAGGAGCTGTTCCGTGCCTTTGACAGTGAGGTTACCTTCCAGTTCTTCAAGAGCTTCAGGCGGGTCCGAATTAACTTCAGCAATGCCCTCGCTGCAGCAGAGGCCAGAGCAAAACTTCACAAGAGTGACTTCAACGGCAGAGAAGTGCGACTTTACTTTGCCCAGTCTGTACATATAGGAAGTCCACGTCTGGAGCCTCCCAAACCGGATAAGCAGTTCCTTCTCTCTCCACCTCCTTCCCCTCCTGTTGGCTGGGAACAGGCTCAAGATGCCACACCAGTCATCAACTATGATCTCCTGTGTGCCATCGCAAGACTTGGTCCAGGTGAGAAATACGAGCTCCACTCTGGAACTCCCACTACCCCCAGTGTGGTGGTGCACGTGTGTGAAAGCGACCAGGACAGCTCTGGTGGCGAGGACGACGTGGACGGATTTAGACGCCCTCGCCCCAAAATTATCCAGACCCGGCGCCCCGACTACATCCCTGCCATCACACAGTGAGCCCGAGGAGCGTCTTCCTTGTGCTGTTGTCTTCGCTTTACCATCTCAGGGGCTGATGGGCGGCCAGCTGTGGCATGCGGTCAGTCTTCCCCTTTAGAGGAGGCCTTGAATCCGAGCCGAGTCCTGTGGAGAAAGAAATAATGTACATGTCCACTATCTTGCAGGGGAAGGGGGGTTCATTGCATGCATTTGTTTTCTCCACAATTAAAATTCAAGGGATTTTCAGGATTGTAAATTCCATTGGTGTCTATGGCTACAGAGTACAAAAGTCTCCAGTtgtgagtttatttatttcctttatctCGAGAAGCATGCTTTGTCCCTTTGAGAAGGTGTGACGTATTTGTATAATGAAATCTGTaatggagtgtgtgttttttttttttttttcctctctatcTCCTCCCTGTCAGCAGTCtcagttttacatgtttttattttattttatttttttatttatgttttcatCTTCCGATTGTAGGAGGCAATAGAATTCCTATGCCTGTGTAGGATTTGATTAATCTTAGGCTTGGAAAGTTTGCGGTTATGggcaatatatttttatgttaatttgtaaGGATTGCTTACTTTCTAAACTATTAATCTGTGTGTGACTGAGGATCTAAAGATGGAGATCCTTATTAGTAATCttacttaattaaaaacaatgcaGTTTGTTGAATAAACTGGTTTTGTTTGCCATGCCTTGTTAAATCTGGTTTACTAATGTAAGTATTTTGGTCAGCTAAAAAGAAACCCCTATTGGACATCTTGGCCCAATGTTATCCTGATTGTAATTTTGTACAGACAGTCTTTCTCATGTCTACACAAATTGTGATTTACATTTAGTTACTTCAGGACCATAACACTGTAAAAGCAATCTGCTTTGATGATGAGGGAggactgttatactgttatgcTCTTTTACCAGAATTTGCACAAGTTAAACACAATGGTAAAAATGAGCTTAACAATGTCAGTCCAATGCCTTTTTGTGTTTCTTGTTTGTCTGTATATGTACAGTTACCTCATTGTAATGTCTTAATTGTCTGATCACTCCCAACTTTGTAACAACTTCCTTGGTTTCAACAATGATGTTGACttactaatggcttggatgtatgTGTTCAAACTTGTACATGAACAGCCAcaaccaaaataataaaacaggaaCTTACACAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231589 lncRNA downstream 606792 30613683 ~ 30625359 (-) True G171082
TU231525 lncRNA downstream 688195 30543565 ~ 30543956 (-) True G171037
TU231524 lncRNA downstream 710321 30521412 ~ 30521830 (-) True G171036
TU231513 lncRNA downstream 814525 30394953 ~ 30417626 (-) True G171028
TU231508 lncRNA downstream 817768 30394953 ~ 30414383 (-) False G171028
TU231723 lncRNA upstream 231393 31468674 ~ 31468905 (-) True G171187
TU231727 lncRNA upstream 302285 31539566 ~ 31539794 (-) True G171191
TU231729 lncRNA upstream 433276 31670557 ~ 31670766 (-) True G171193
TU231730 lncRNA upstream 473828 31711109 ~ 31711481 (-) True G171194
TU231731 lncRNA upstream 478702 31715983 ~ 31716290 (-) True G171195
XM_022680558.1 mRNA downstream 2095 31228210 ~ 31230056 (-) True LOC107197676
XM_007227891.2 mRNA downstream 9646 31214220 ~ 31222505 (-) True mab21l3
XM_022680011.1 mRNA downstream 10820 31214220 ~ 31221331 (-) False mab21l3
XM_022680012.1 mRNA downstream 10820 31214924 ~ 31221331 (-) False mab21l3
XM_022680556.1 mRNA downstream 34190 31179433 ~ 31197961 (-) True LOC103024756
XM_007227885.3 mRNA upstream 7492 31244773 ~ 31254407 (-) True LOC103022864
XM_022680563.1 mRNA upstream 658551 31895832 ~ 31904168 (-) False gabpa
XM_022680561.1 mRNA upstream 658551 31895832 ~ 31904168 (-) False gabpa
XM_022680562.1 mRNA upstream 658551 31895832 ~ 31903157 (-) True gabpa
XM_022680564.1 mRNA upstream 666988 31904269 ~ 31912403 (-) True LOC103043487
TU231269 other downstream 2544472 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 3329252 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 5326669 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 5722735 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 6907646 24312583 ~ 24324505 (-) True G169980
TU231746 other upstream 663067 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 1521237 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 1936772 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 1977041 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 3700024 34937305 ~ 34959712 (-) False rftn2

Expression Profile