RNA id: XM_022680011.1


Basic Information

Item Value
RNA id XM_022680011.1
length 1769
RNA type mRNA
GC content 0.45
exon number 6
gene id mab21l3
representative False

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 31214220 ~ 31222505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatatgtttatgtttatggtaATTGTGATACAGCAGAGtggtgatttatttattatagtgttTTCCTCTCAGGTGGACCTCAGGCACAGACAGGTCTCCAAATCAGTAGAAGAAGTGCAGAAAATAATCAAAGACTTGACCACTGAGGTCAGCTCTAAAGATGCTCGCTTCCAATCCATCTCCAACTCTGGAGTTCACAATGACTGTTTTAAGGATCAGCCTGCTTTAGCATCAAAATGGGCTGCGTTACTTCGGGGAAGGTGTACCTTAAATCCGGCCATTCAGGTGCTGACTCCCACTCTGTTCCTGATCTCTGTGCCCGTGCGTGGCCTGATGGCCTATAAAGAGAGGCAGGCGCGGCAGTGGAGGTACTACACACTGAGCGGGTCACGCCTTCTCTCCCCAGTGCGAGATCCAGAGAAGTTGCACCAGTGGCTGGAGCTGGAGAGCTTCGCCAACGCCTCTCAGGAGTGGCATGACTCCCGTGTGATCATGGAGGGGGATATCGTTCCCGCTAAAGTCGTCACTGTATTTAAGGAGCAGGTACAGGCTGCTATTAAAACCTGCAAATTCACAGCCAAAGTGAGCATTCTGGAGTCGGTGGGCTCGGTGGTCCGTGTTGCTGTGGAAACCTCGGATGTGCAGGTCGAGGTGGAGCTGGTGCCCACAGTGGAGCTGATGAACTGCTGGCCGAAAAGAGCCCGCTGGCCTCACCTGCTGCAGAGATGGCCTTCAGCTGAGCGCAGCCGCAGCGTTAAGtcttTTGGTTTTAATCTAATGGCTATGTCCAGTTACCACTGGCTGCTGTCGTTTTCACGGGCAGAGCAGGTGCTGCTGGGAAGTATGGACGAGGACGGCGGCTGTCGTAAGAAGTGTTACATGGTGGTCCGTCAGCTGAAGGAGGATGTGTGGTGTCCAGGGAGCAAACCTGTCATCACCGCCCACCATTTACAGATGCTGCTGTTCTGGACGTGTGAGAAGTACCCAAGCTCCAGGGACTGGCGTAACTTGCGAGAGTGTGTTCTGCGTCTGGTTCAGAAGCTGCATAAGTGTGTTTCTCAGCGCTACATCAGGCACTACTTTGTTCGTACCTACAACCTGCTGAAGTACACCAACACTAACGAGCTGGATGACATGGCCAAAAAGATCTCAAACTTCCTGGAAAACCCACACACTTATATTCATTAGGTTATCACGCCtaataaaatgagtaaaatatttaaataagggAGATTATTTATGTGTACAGAGATGCACACCAGCAGTGTGCATCTCTGTAAATATGCACCTTTCTGTTAGAATAAACACATCTGAGCTGTGATAGAGTTCATTAAGGGTGTGAAGTTGTTGGTATTTCGtgtaaaaaaagcaaacatttcAGAAATGTATAGCATTCAGTTTttgatactgtatattttgttgTAGTTACTGTAACTTGAATGAATATataaaagatagagagataaaaccGATGCTGCATTCACGTGCTTTAGCAGTTTATGTaggaaataaaaactgtaaatgtagctttattcatttttttatgttttataacatATATGTTGTATGGTGTTACTATTAGAATCAATGTATAAAAAgcacattatttatattttaccacTGTTTACACGCCCACTGACAAATTTCCGTGTGCCTGACTTTAGGGTGTTCACATGTTGATTCATGATGGAAACCTCTTTTTCTCTGATAAAACTGACCCTCCATAAATGCAGCAATGAGTCTgaaaatattgttttgttttttttcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU231589 lncRNA downstream 588861 30613683 ~ 30625359 (-) True G171082
TU231525 lncRNA downstream 670264 30543565 ~ 30543956 (-) True G171037
TU231524 lncRNA downstream 692390 30521412 ~ 30521830 (-) True G171036
TU231513 lncRNA downstream 796594 30394953 ~ 30417626 (-) True G171028
TU231508 lncRNA downstream 799837 30394953 ~ 30414383 (-) False G171028
TU231723 lncRNA upstream 247343 31468674 ~ 31468905 (-) True G171187
TU231727 lncRNA upstream 318235 31539566 ~ 31539794 (-) True G171191
TU231729 lncRNA upstream 449226 31670557 ~ 31670766 (-) True G171193
TU231730 lncRNA upstream 489778 31711109 ~ 31711481 (-) True G171194
TU231731 lncRNA upstream 494652 31715983 ~ 31716290 (-) True G171195
XM_022680556.1 mRNA downstream 16259 31179433 ~ 31197961 (-) True LOC103024756
XM_022680674.1 mRNA downstream 155972 30550239 ~ 31058248 (-) True lrp1b
XM_007227895.2 mRNA downstream 820251 30384602 ~ 30393969 (-) False LOC103025591
XM_022680558.1 mRNA upstream 6879 31228210 ~ 31230056 (-) True LOC107197676
XM_007227887.3 mRNA upstream 10820 31232151 ~ 31243516 (-) False rcan1
XM_022680559.1 mRNA upstream 10820 31232151 ~ 31237281 (-) True rcan1
XM_007227885.3 mRNA upstream 23442 31244773 ~ 31254407 (-) True LOC103022864
XM_022680563.1 mRNA upstream 674501 31895832 ~ 31904168 (-) False gabpa
TU231269 other downstream 2526541 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 3311321 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 5308738 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 5704804 25502135 ~ 25509416 (-) False LOC111194864
TU230159 other downstream 6889715 24312583 ~ 24324505 (-) True G169980
TU231746 other upstream 679017 31900348 ~ 31903527 (-) False gabpa
TU232121 other upstream 1537187 32758518 ~ 32772132 (-) True ndp
TU232221 other upstream 1952722 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 1992991 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 3715974 34937305 ~ 34959712 (-) False rftn2

Expression Profile