RNA id: TU232121


Basic Information

Item Value
RNA id TU232121
length 1605
RNA type TUCP
GC content 0.51
exon number 3
gene id ndp
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32758507 ~ 32776018 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gttCTTGAGGTGATATATGACTGCTGTGTCACGTTCCACATCTGACAACCATCCTGAGACGTGCATCATCTGTCCTTTCCCTTTTCCCTCTGATTCCtctatacagaaaaaaaaaaaaaaacgaggggTGTGAATGTCAGCACAGCAgaggaggaggggagggggagcagggaaagaaagagacagagagagagggagaaagggagTCAGAGCTCACACAATCAGTGTGCGTGAGAGGgagagtgaaatagagagagtgaaGAGGGAACGAGGGAGgaaaggagagggagagaaaggagagagagagagagagagtgagggatagAAAAGGGGGTTTAAAAGCAATTTCAGTGCTGCTTCAGTCCAGTGAGGTGCAGCCGGGGCTGGATATTATATTGAGAGCTGGAAGGAGCTGGAGAAAAGAAAGAACCACCCAAGCAGAAACCGCAGGAGATGGCGACGCCTGAGGAACGAGCTAACTACGCGCTCCAAGTTACCAGTGTGGTACCAGAAGTTGGGCAGAAAGTTCTGCGTTTTCCTCTGTAGTAGGATAGGCATCATTTCCCTCCATTCGTCTGCCAGGAAGCTTGCTCACTTTTGCAATCGAGCCAAAGGTCCAGTATGAGGAACGCAGGCCCGCTAAGCCAGCCAGGGATTGTGCTGCTGCTGGTCACGTGTCCGCTGCTGAACATTCTGCGTGGAGTTACCTGCAAGGCTGAGAGTGGACACCTTGGAGACACTGATCCAGACAGGTGTATGCGGCACCACTTTGTCGAGACCATCACGCATCCCATCTACAAGTGCAATTCCAAGATGGTTCTGCTGGCTCGCTGCGAGGGTCACTGCAGCCACACGTCTCGCTCAGACCCCCTCATCTCCTTCAGCTCCGTCCTCAAGCAGCCGTTTAAGAGCACGTGCTTCTGCTGCCGCCCGCACACCTCCAAGCTGAAGGCGGTGCGCCTGCGCTGCTCCGGCGGGACCCGAATAACCGCTACCTACCGCTACATCCTCGCGTGCGGCTGTGAGGAATGCAACTGAACGGGTTCGCCGAGAGGACCCTGCCAAGACTTTAAACTGTTccatttttctgtgtgttttattgctgtCTATATTAGAGAAGCTATTTCACGATTCATTAGCAGCGCCGGAGTTGGTGGACATCATGCCAGCAACATAAAATCTCAGCATCCCAAAGAAAAGAAACATTCATTCAAGTGTTGCACCTGGGCCTGGTCTCCACCAGTTGATTAGTTTCGAATGCATTCCATCGCTTTTGATCACCAAATGTGGAAAATTATGGATGCTGGCAAACCACAGCGCAATCATGAGAGTACCTCGGAGGTGCCGGGTCCGTTCTCCAGGCTGGAGAAGGTCCAAGGAAAGCGCGAGAGCTCTTGGGAACGGCTCGTGGGTTGAGGAGGCAGTTGCCGGGGGTGACGTCTCTGTTTCAGTTGCTGGACACTGTACCGTAGATGCTCGGACTGTACGAGAGGATTATGGGCTGTGTCTTGAGAAACTGCCCTGAGAAACTTCTAAATGTTctggttattatttttttctttattttgcctAGATGTTCAATCTTCCCGTTCTGGTAATAAATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232111 lncRNA downstream 55662 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 74870 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 79542 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 514085 32240638 ~ 32244433 (-) True G171280
TU231788 lncRNA downstream 779226 31979091 ~ 31979292 (-) True G171237
TU232130 lncRNA upstream 33505 32805637 ~ 32811201 (-) True G171479
TU232149 lncRNA upstream 141786 32913918 ~ 32931640 (-) False LOC111194944
XR_002651392.1 lncRNA upstream 141975 32914107 ~ 32932234 (-) True LOC111194944
TU232179 lncRNA upstream 188472 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 250947 33023079 ~ 33099931 (-) True G171525
XM_007227824.3 mRNA downstream 12947 32699967 ~ 32745571 (-) True maob
XM_022680590.1 mRNA downstream 121341 32408907 ~ 32637177 (-) False cask
XM_022680582.1 mRNA downstream 121341 32408907 ~ 32637177 (-) False cask
XM_022680588.1 mRNA downstream 121341 32408907 ~ 32637177 (-) False cask
XM_022680585.1 mRNA downstream 121341 32408907 ~ 32637177 (-) False cask
XM_015604852.2 mRNA upstream 10248 32782380 ~ 32798126 (-) True efhc2
XM_007227822.3 mRNA upstream 10248 32782380 ~ 32798125 (-) False efhc2
XM_015604876.2 mRNA upstream 12151 32784283 ~ 32798126 (-) False efhc2
XM_007227821.3 mRNA upstream 27042 32799174 ~ 32803894 (-) True fundc1
XM_022680594.1 mRNA upstream 99986 32872118 ~ 32878667 (-) True c19hxorf36
TU231746 other downstream 854991 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4070839 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 4855619 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 6853036 25896595 ~ 25905482 (-) False LOC103030841
TU230256 other downstream 7249102 25502135 ~ 25509416 (-) False LOC111194864
TU232221 other upstream 401921 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 442190 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2165173 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2449583 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2598311 35370443 ~ 35371387 (-) False olig2

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014703 False 2603 mRNA 0.46 3 CM030128.1 27868715 ~ 27879755 (+)