RNA id: XR_002651392.1


Basic Information

Item Value
RNA id XR_002651392.1
length 2417
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC111194944
representative True

Chromosome Information

Item Value
chromosome id NC_035915.1
NCBI id CM008318.1
chromosome length 35429340
location 32913918 ~ 32932234 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttggaatttgggacaaatgttgtgtgtagtttCCATGgtgttatttaaaaagtgaCAGTCATTCATAGTTGGTGATTCAGTGATTCATTGTCGTTATCGTGTAGTTCATAGCAGTTTTCATTTCACAACATTTCACTTTACAGTAGTTACTATGAAGTTCATAGTAATTATTCTGTAATTAATGGTCACGACTGTAGTAACATAATAACAACTAAATAATGAAACTTAAGATTGACAACTGAAGGCACATAGGcttttaaggggttaatatgTATGGAAAGATGTCTACAGAGAAGTGGTATTGCTCAGCGAGGGCTTTATTTCTTCAGCTGTACGCAGTCGTAGCTCGCGTGTGAGGTTCGCTAGGGTTCCCGTGGAGAAAGCAGGGCTGTACTTCATAAAGCCTCATTAGGCTCACTGTGCGAGGGGGAAGCGGCTGGACCGAGAGTGCCAGACATTAGCCTTATTTAGAGACACTGACCATTCTTCAGGCGCACAGGCAGGGAGTTTCCTGCTCTGGaggatctgtctctctctctctctctctctctgtcggtTCTCCCCTCCTCCCCTTTGCGTCgtgctctttttttctgaatgggTGTCCTCTGTCTAACCTCTCAATTCTGAGTGCTGaaacaggacactgccctgaaCAGCGATAGGCTGCCAGCGGAGAACGCTCAGCCCCCTCTGAGCTATAAAACCTAGCAAGTCCTGCAGCGTCTAACCGCCtgaccagagagagaaagagagagagggatagagtgAGGGAGCCAGACAGTGtgaatgtaagagagagagagaaaaaggggagggagatagagagaggtagagagggagggagggacaGGCTTTTAAATCCGATGACAGTGTTAACAGTGATAGTCAGCTCCGGCTGAAGCTGCAGAGAGAGGTGTTTGGCTGAAGTGGAGACGGAAACCACCGCCGCTACTGCTGCAGCCTCTACTGCTGCTGTCACTTTAAGACTGTTACTGATTAGACGCCTAAGAATGTGACTGGAaaaacagaaggagagagaaaaaaggggacaaacaaaaagagagacccagagagagacagagagaaaaagagagcgattCAGACCGGCACTCTCCTAGAGGATGCTGGTATCGCTCCTTCGAGCTGGTCtttaattttccagcactgATTTCACACCAGTTCCGGAGCTATGACAACCTGTGaatctgatctctctctctctctctctttctccctctctcactctgtttgcTTGCGGCTTTTCGAAGAGGTTGGACTTGAGGAACTGTCGGAGGAGACCCGGCACATGGACAGGCAACGGCGCTCAGCCATCAGGAAATACTCCTTTCACCCAGACTGAgTTTCGGAATTCATGTTTTACCACTTTCCTCCTTCAACTGCAAGGTCAAATTCTAAGCAATCGGAGGCTCTGGAGTGTCGAGGAGGACAGCAGCAGGACTGCCGCTGTGCCTGGTTTGCCTGTTTGCTCATGAGGTGCTCAGTAGTCAGTGTAGATCCTGTGTTGCAATCAGCAGCTACATCTGGCTACTGGGTCTCTGATGGCATTCAACTTCCTGCTGGCACATTCCTTTCAGATTGTGTGGTATGTTATCACAATGTGGGCTTCATCCTGTGACCACACAGAATGGCGCTCTCTGTGTCGCAGAGGCACTAAAAGGAGGTCCTTGTCAGCGTAGTTTCCCCTGCTCGTACTGCTCGTTCTGCTCGTACTGCTCGTACTTCATTACGATACATCCCCCGTCCCAAAATCCGTAGGTTCCTTCCGTAGACGTCTGACCTCTCTGTGCATCTCTATCAGTGTTTCGTATCTCCGAAATCTATTGTTTCCACAAATAATTTGACATACGTTCTGCCATACGTCCGCATTGTGGAAGCAACCTGAAATTACGGCCGGCTGGTGTTTTGACGCGGCCGCGTTGCCCGATGAATGGATCCAGCCATTGTCGCTGGGCTGACTGTTGAGGATTCAGTTTGAGTGATTTAACGACAAAGGACAAAGGCGAGATGTCGCATTCTCTGTGTGATTAGGCTGTCACAGTGGCTGTGTGTTTGCGCGAATGCCTTCAGCAGCCGCTGACGGCTGAGGAATAATGAACGCGAATCCGACGAGGGCCGCCacgatttttcttttttccccagcGAGCGCGAAGGACGGATTCTTTTGTGCTGTCCTGAACCTGGCATACAATGTAGATTTCTGTGTGGTACAATCTACAGCTACATTGTCTGCTGGGTTTCAGGCCGGCCCAGCATTCCTCCATTCCTTTACCATCTTCGTTTTTCTCTAAAAGCAAATACGTAAGtaataattcgttttttttttttttacagaaaatgtgtacaaataatttgaacacaataataaaagaaagcacTGGAATGCACCAATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU232130 lncRNA downstream 102906 32805637 ~ 32811201 (-) True G171479
TU232111 lncRNA downstream 211251 32696106 ~ 32702856 (-) True G171461
XR_002651311.1 lncRNA downstream 230459 32682328 ~ 32683648 (-) True LOC111194865
TU232113 lncRNA downstream 235131 32678654 ~ 32678976 (-) True G171463
TU231843 lncRNA downstream 669674 32240638 ~ 32244433 (-) True G171280
TU232179 lncRNA upstream 28370 32960604 ~ 32965237 (-) True G171523
TU232182 lncRNA upstream 90845 33023079 ~ 33099931 (-) True G171525
TU232213 lncRNA upstream 195252 33127486 ~ 33128622 (-) True G171546
TU232223 lncRNA upstream 245685 33177919 ~ 33178325 (-) True G171554
TU232224 lncRNA upstream 247149 33179383 ~ 33179849 (-) True G171555
XM_022680594.1 mRNA downstream 35440 32872118 ~ 32878667 (-) True c19hxorf36
XM_007227821.3 mRNA downstream 110213 32799174 ~ 32803894 (-) True fundc1
XM_015604852.2 mRNA downstream 115981 32782380 ~ 32798126 (-) True efhc2
XM_022680596.1 mRNA upstream 168700 33100934 ~ 33107739 (-) True slc35a5
XM_007227817.3 mRNA upstream 205573 33137807 ~ 33169651 (-) False dcaf6
XM_022680598.1 mRNA upstream 205573 33137807 ~ 33169651 (-) False dcaf6
XM_007227815.3 mRNA upstream 205573 33137807 ~ 33169651 (-) False dcaf6
XM_007227814.3 mRNA upstream 205573 33137807 ~ 33169651 (-) True dcaf6
TU232121 other downstream 141975 32758518 ~ 32772132 (-) True ndp
TU231746 other downstream 1010580 31900348 ~ 31903527 (-) False gabpa
TU231269 other downstream 4226428 28686050 ~ 28687679 (-) True G170854
TU230949 other downstream 5011208 27900794 ~ 27902899 (-) False LOC111194963
TU230416 other downstream 7008625 25896595 ~ 25905482 (-) False LOC103030841
TU232221 other upstream 241819 33174053 ~ 33176284 (-) True G171553
XR_002651393.1 other upstream 282088 33214322 ~ 33235878 (-) True LOC103028031
TU232866 other upstream 2005071 34937305 ~ 34959712 (-) False rftn2
TU232897 other upstream 2289481 35221715 ~ 35222225 (-) True G172060
TU232919 other upstream 2438209 35370443 ~ 35371387 (-) False olig2

Expression Profile